KEGG   Typha angustifolia (narrow-leaf cattail): 140775460
Entry
140775460         CDS       T11061                                 
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial isoform X1
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:tang00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tang03016]
    140775460
Enzymes [BR:tang01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     140775460
Transfer RNA biogenesis [BR:tang03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    140775460
SSDB
Motif
Pfam: RNB CSD_RNase_II HTH_RNase_II
Other DBs
NCBI-GeneID: 140775460
NCBI-ProteinID: XP_072974869
LinkDB
Position
14:complement(join(13190194..13190310,13190907..13191131,13191721..13192116,13192437..13192596,13192697..13192846,13192936..13193042,13193178..13193240,13193325..13193507,13193713..13193934,13194323..13194454,13194536..13194613,13194691..13194804,13194953..13195115,13195359..13195630))
AA seq 793 aa
MRTPMATRAVSGSSIFRSAGSPPLCAFLSLRLFHLRPSALYGHPPPGLFSGNLALGYGGG
SRSRFAHSLVESVMEELEEIRARRRVRASINRMGLSSTKELFDVKLEKKTLQKGALLEFR
KDSQKSLLAVASKPDGKKNWMVYDQNGIISSIKPQQITYIVPGIENFDHTDIADFAQRAR
DILDPAILECAWVELLEKNKSVTVEELAEIIYGSSDPLESYCAHLLLSRDEIYFNVIEKR
DSSPVYEPRPTIQVEELLHRKLVKEANEKELEEFVQLLISAKAMPPHSKPSKSSWIVEEK
VRQKIESLEAYGIDACKNDDQRKTAGNILKAMGLSKISSAAIDLLIDVGYFPVHVNLDLL
KFNIRTGYSGEVLSAAEDLLAQSSDPDEHIRKDLTFLKVYAIDVDEADELDDALSATRLS
DGRIKIWIHVADPTSLVEPQSIIDREAMRRGTSIFLPTATFPMLPEKLAMEGMSLQQGKI
CKTISVSVTLRPDGSIAEYSIDNSLIRPTYMLTYESASELLHLNLEEEAELRILSEAASL
RLQWRRNQGAIDTATIEPRIKVANPDDPEPSITLYVEDQAGPAVRLVSEMMILCGEVVAT
FGSYNNIPLPYRGQPQSNMSASAFDHLPEGPVRSSAYVKIMRAAEMDYRKPIRHGVLGVP
GYVQFTSPIRRYVDLLAHYQVKAFLRGESPPFTAGELEGMACLVNMHVKVARRLQNSSLR
YWLLEYLRRQQKERKFNALILRFIKDRLAALLLVEVGIQASAAVSLGKQIGDEIEVVVEE
AHPRDDVLSVKEV
NT seq 2382 nt   +upstreamnt  +downstreamnt
atgagaacgcccatggcgaccagagcggtgagcggctcttccatcttccgctccgctggt
tctcctcccctctgcgccttcctctccctccgcctcttccacctccgtccttccgctctc
tatggtcatccgcctccggggcttttctctggtaaccttgccctcgggtatggcggcggt
agccggtcccgcttcgcccacagcctcgtcgaatccgtcatggaggagctcgaagagatt
cgcgcccgaagacgagtccgggcgtctatcaacaggatgggtttatccagcactaaggag
ttatttgacgttaaattggaaaagaaaactttgcagaaaggagcattgcttgaatttcgg
aaagattcccaaaaatcattgcttgcagtcgcttcaaaacctgatgggaagaaaaattgg
atggtgtacgatcagaacggtataatatcctcaataaagcctcagcaaatcacatatatt
gtgcctggaattgaaaattttgaccacacagatattgctgattttgcgcagagagctcga
gatatcttggaccctgctatactggaatgtgcttgggtggagctcctggagaagaacaag
tcagtgacagtggaagaattagcggagatcatatatggtagcagcgatcctcttgaaagc
tactgtgcacatctcttgttgtcaagagatgaaatatattttaatgtgattgagaaaaga
gattcttctcctgtttatgagcctcggcctaccattcaggtggaggaacttttacacagg
aagcttgtcaaggaggcgaatgagaaggagcttgaagaatttgtccaactgcttatttca
gcaaaggcaatgcctccacactctaagccttctaaaagttcatggattgttgaggaaaaa
gttagacagaagattgagtctcttgaagcttatggcattgatgcctgcaagaatgatgac
caaagaaaaacagcaggaaatatactcaaggcaatgggactatctaagatttcatcagct
gcaatagaccttcttattgatgttggatatttccctgttcatgtcaatcttgatctcttg
aaattcaacattcgtactggatatagtggcgaagtattgtcagctgctgaagatcttttg
gcacaatcttctgatcctgatgagcacatcaggaaagatcttacattcttgaaagtatat
gcaattgatgtggatgaggctgacgagctcgatgatgctcttagtgcaacaaggctctca
gatggtaggataaaaatctggattcatgttgctgatcctacaagcttggttgaacctcag
agcataattgacagagaggcaatgagaagaggtacctccatatttttgccaactgctacc
tttccaatgttaccggaaaagcttgctatggagggcatgagcttgcagcaaggaaaaatc
tgcaagacaattagtgtttctgtgacactgcgcccagatggcagtattgcagaatattcc
atagacaactcattgatcagaccgacctacatgttaacatatgagagtgcatctgagtta
cttcacttgaacttggaagaggaggctgaattaagaattctttcagaagctgcttccctc
cggttacaatggcgtcgcaaccagggtgcaatagacacagccacaatagagccacgcatc
aaggtggctaatcctgatgatcctgaaccctccattactctgtatgttgaggaccaagct
ggtcctgctgtacgacttgtatctgagatgatgatactctgtggggaggttgttgccaca
tttggttcctacaacaatatcccattgccatacagggggcaaccccaatcaaacatgtcc
gcatcagcatttgatcaccttcctgaaggccctgtgaggagttctgcgtatgttaagatc
atgcgagcagcagagatggattataggaagcctatacgccatggtgttcttggtgttcct
ggttatgtacaatttacatctcccattagaagatacgttgatcttctagcccactatcag
gtaaaggcttttcttcgaggcgaatctccacctttcacagctggtgaattagaaggaatg
gcatgtcttgttaatatgcatgtgaaagtagctaggaggcttcagaacagcagtctaaga
tattggttgttggagtacttgagaagacaacaaaaggaaagaaagtttaatgccttgatc
ctgaggttcatcaaagatcggcttgcagctctgcttctggtagaggttggaattcaagct
tctgcagcagtttcacttgggaaacagattggagatgaaatagaagttgttgtggaagag
gctcatccacgggatgatgtcctttctgttaaagaagtgtaa

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