Typha angustifolia (narrow-leaf cattail): 140775597
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Entry
140775597 CDS
T11061
Name
(RefSeq) THO complex subunit 4B-like
KO
K12881
THO complex subunit 4
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03013
Nucleocytoplasmic transport
tang03015
mRNA surveillance pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140775597
09122 Translation
03013 Nucleocytoplasmic transport
140775597
03015 mRNA surveillance pathway
140775597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140775597
03041 Spliceosome [BR:
tang03041
]
140775597
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140775597
TREX complex
140775597
Spliceosome [BR:
tang03041
]
Complex C
Other components
EJC/TREX
140775597
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140775597
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
YHR127W_C
RRM_3
RRM_10
Motif
Other DBs
NCBI-GeneID:
140775597
NCBI-ProteinID:
XP_072975080
LinkDB
All DBs
Position
14:complement(join(505111..505267,506716..506900,506979..507047,507793..507927,508063..508263))
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AA seq
248 aa
AA seq
DB search
MSSALDMSLDDIIKSNKKSSSSTVSAAGSGGGGGGIPRDRRRSAGSGPTRRFPNRSGNRP
APYSVGKAPESAWQHDMYTDHPAPAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGD
LKRYTIHYDRSGRSKGTAEVVFARRADALAAVKRYNSVQLDGKRMQIEIVGRTIPAPSAV
PPASNGVHRNLNGAPMSGPRSNTAGLARRGGRGRGRRGGRGKDRAPPVSTTDLDADLEKY
HAEAMQTN
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtgccttggatatgtccctcgacgacatcatcaagagcaacaagaagtcctcc
tcctccaccgtctctgccgccggtagtggtggcggcggcggcggaatccctcgggaccgc
cgccggtctgccggatcaggtcccacacgccggttccccaaccgatctgggaatcgcccc
gctccttactccgtggggaaggctccggagtcagcgtggcagcatgacatgtatacggat
catcctgctcctgcgggtagggcgtcggcgatcgagacggggaccaagctttacatctcg
aatttggattatggagtctccaacgaagacatcaaggaacttttttcagaggttggtgat
ctgaagcgctacacgattcattatgataggagtggaagatctaagggaacggctgaagta
gtatttgcaaggcgtgctgatgctttagcagctgtgaagaggtacaacagtgtgcaactt
gatggcaagcgaatgcaaatagaaattgtaggaagaactattccagctccatctgctgtg
cctccagcatcaaatggggtccataggaatttgaatggggctcccatgagtggacctaga
agcaacacagcaggattggcacgacgtggtggccgtggaagggggagacgtggtggacga
ggaaaagaccgtgccccgccagtatcaactacagatcttgatgctgacttggaaaagtac
catgctgaagcaatgcagaccaattaa
DBGET
integrated database retrieval system
