Typha angustifolia (narrow-leaf cattail): 140775765
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Entry
140775765 CDS
T11061
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog A-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03013
Nucleocytoplasmic transport
tang03015
mRNA surveillance pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140775765
09122 Translation
03013 Nucleocytoplasmic transport
140775765
03015 mRNA surveillance pathway
140775765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140775765
03041 Spliceosome [BR:
tang03041
]
140775765
03009 Ribosome biogenesis [BR:
tang03009
]
140775765
03012 Translation factors [BR:
tang03012
]
140775765
Enzymes [BR:
tang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140775765
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140775765
mRNA cycle factors
Stress granule specific factors
140775765
Spliceosome [BR:
tang03041
]
Complex C
Other components
EJC/TREX
140775765
Ribosome biogenesis [BR:
tang03009
]
Eukaryotic type
90S particles
Helicases
140775765
Translation factors [BR:
tang03012
]
Eukaryotic type
Initiation factors
eIF-4
140775765
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
CMS1
Motif
Other DBs
NCBI-GeneID:
140775765
NCBI-ProteinID:
XP_072975290
LinkDB
All DBs
Position
2:join(8243329..8243657,8244365..8244605,8244692..8244772,8245067..8245174,8245255..8245374,8246266..8246433,8246678..8246764,8247206..8247319)
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AA seq
415 aa
AA seq
DB search
MAAAATATAMAAPPRARQQQGRGGVDDEALVFETTPGVEVITSFDQMGIRDDLLRGIYAY
GFEKPSAIQQRAVIPIIQGRDVIAQAQSGTGKTSMIALSVCQMVDTSSREVQALILSPTR
ELAAQTEKVILAIGDFINVQVHACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTL
RTRALKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTGKFMTDP
VRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEK
MRSNNFTVSSMHGDMPQKERDAIMAEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPN
NRELYIHRIGRSGRFGRKGVAINFVRKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagcggcgacggcgactgcgatggcagcgcctcctcgagctcggcaacagcag
gggcgcggaggcgtggatgacgaggccctggtcttcgagacgacccctggggtggaggtg
atcacgagcttcgaccagatggggatacgcgatgatctcctacgggggatctatgcctac
gggtttgagaagccctccgcgatccagcagagggccgtcatccccatcatccaaggccgc
gacgtgattgcccaagcccagtccgggacagggaagacctccatgatcgcgctctccgtt
tgccaaatggttgacacttccagccgagaggtccaggcattgattctatcacccactaga
gagcttgctgcacaaactgaaaaagtgatattggctataggtgatttcataaatgtacaa
gtgcacgcatgtatcggtgggaagagtataggtgaggatatcaggaaactagaatatgga
gttcacgttgtctcaggaacaccaggcagagtctgtgatatgatcaaaagaagaacctta
cgtacaagagctttaaagcttctaatccttgatgaatctgatgagatgttgagcagaggc
tttaaggatcagatttatgatgtgtacagatatctccccccagatcttcaggttgtttta
atatctgcaacccttccccatgaaatactggagatgacaggcaaatttatgacagatcct
gttaggatacttgtaaagcgtgatgaattgacactagagggcatcaaacaattctttgtt
gctgttgagagggaagagtggaagtttgatacattgtgtgatctgtatgacaccctcact
atcacgcaagctgttattttctgcaacaccaagagaaaggtcgattggctgactgagaaa
atgcgcagtaataactttacagtctcttcaatgcatggagacatgcctcagaaggaaagg
gatgcaataatggcagagttcaggtcaggagcaacacgtgttttgattacaacagatgtg
tgggctcgagggcttgatgttcaacaggtttctcttgtgataaattatgatcttccaaac
aatcgagaactttatatacatagaattggtcgctcaggacgttttgggcgtaagggtgta
gccataaactttgtgcgcaaggatgacatcaggatactaagagatattgagcagtattac
agtactcaaattgatgaaatgcccatgaatgttgctgaccttatctga
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