Typha angustifolia (narrow-leaf cattail): 140775980
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Entry
140775980 CDS
T11061
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018
RNA degradation
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140775980
09123 Folding, sorting and degradation
03018 RNA degradation
140775980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140775980
03041 Spliceosome [BR:
tang03041
]
140775980
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140775980
mRNA degradation factors
5'-3' decay
Lsm complex
140775980
Spliceosome [BR:
tang03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
140775980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
140775980
NCBI-ProteinID:
XP_072975602
LinkDB
All DBs
Position
14:join(1334202..1334204,1334333..1334374,1334478..1334576,1334675..1334752,1336213..1336255,1336678..1336833,1336932..1336954)
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AA seq
147 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRADRKPPGVGRGRGRGREEGGRPAKGIGRGLDDG
GSKAGGRGRGGPGGRGGGGRGGGRGRG
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgcttccattgtcgcttttaaagacggctcaaggtcatcccatgcttgttgagttgaag
aatggggagacatacaatgggcacttggtgaattgtgacacatggatgaacattcaccta
cgtgaggtgatctgtacctcaaaggatggtgatagattttggagaatgccagaatgttac
atacgagggaatacgataaagtatcttcgtgtccctgatgaggtgatcgacaaggttcaa
gaagaaaccagcaaaagccgtgcagataggaagccgcctggtgtaggccgtggaaggggg
agaggaagagaggaaggtggaaggcctgcaaaaggcattgggcgtggcctggatgatgga
ggcagcaaagctggtggccgtggtaggggtggacctggtggaagaggtggtggtggtaga
ggcggaggacgtggccgtggctga
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