Typha angustifolia (narrow-leaf cattail): 140776169
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Entry
140776169 CDS
T11061
Name
(RefSeq) transcription initiation factor TFIID subunit 15b
KO
K13098
RNA-binding protein FUS
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03015
mRNA surveillance pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140776169
09122 Translation
03015 mRNA surveillance pathway
140776169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tang03041
]
140776169
Spliceosome [BR:
tang03041
]
Complex A
Other components
Complex A specific factors
140776169
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
Zn_ribbon_RanBP
RRM_MARF1
Motif
Other DBs
NCBI-GeneID:
140776169
NCBI-ProteinID:
XP_072975883
LinkDB
All DBs
Position
14:complement(join(3531545..3531668,3532430..3532511,3532604..3532754,3534985..3535609,3535709..3535790,3535883..3535985))
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AA seq
388 aa
AA seq
DB search
MSGAYGGGGGDYAGPPRGGGGYGRGGGGGGYGNRGGGGYRGGGGGRSGGGDRDGDWVCPN
SSCGNVNFARRVECNKCGAPSPGGNGGGSDRGRGGGGYNRGGGDYNSRGGSRGYDENRGG
RSGGYGGRGGYGDSSQGREERGYANPDREGMGYSQVPPPSAGNYPPPPNSYGGNSSLPPS
YGAPPQNSYGGEAAIGRGGYGGRGISARDGGGSGGASAPYGDASIEPSVKVKQCDENCDD
SCDNSRIYISNLPLDVTIEELHELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDESGRNKG
DAVLSYEDPSAAHSAGGFYNNYDLRGHKIGVAMAAKSAPKAPPPFSHRGGRGGYGGGGGG
GRRRDSFNDGGGSGPDRNYGGGQRSRPY
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtgcgtatggcggcggaggaggtgattacgcggggccaccgcgaggaggcggc
ggatacggcagaggaggtggaggcggcggttacggaaatcggggtggaggcggatatcga
ggcggtggcggcggccgtagcggtggaggtgaccgtgatggggactgggtttgccctaat
tcgagttgcgggaacgtaaactttgctagaagagtagaatgcaataagtgtggtgctcca
agtccgggcggcaatggcggtggttccgatagaggcagaggcggtggtggatataataga
ggtggtggagattataattctcgtggtggaagccggggttatgatgagaaccgtggtggt
cggagtggtgggtacggcggaagagggggttacggcgacagtagccaggggcgggaagag
cgtggttatgcgaatccggatagggaaggcatgggctattcgcaggttcctccaccttcg
gctgggaactatccgcctccaccaaactcttatggtgggaatagttctcttcctccaagc
tatggtgctccacctcaaaactcttatggtggtgaggctgctattggtcgtggaggttac
ggtggtcgtggaattagtgcccgtgatggtggtggcagtggtggtgcgtcggctccttat
ggagatgcttctattgaaccctctgtcaaggttaagcagtgtgatgaaaattgtgacgac
tcatgtgacaattcaaggatttacatttcaaatttgccgctagatgtgactattgaggag
ctgcatgaactttttggagggattggacaagttggaaggatcaagcagaaacgtggctac
aaggatcagtggccttggaatataaaaatatataccgatgaatctggaagaaataaagga
gatgctgtactgtcttatgaggatccctctgcagcacattcagctggcggattttacaac
aattatgatttgaggggccataagataggtgttgcaatggccgcaaaatctgcacctaaa
gctcccccacctttttctcacaggggcgggagaggtggctatggtggtggtggtggtggt
ggcaggcgcagggacagtttcaatgatggtggaggatcagggcctgatagaaactatgga
ggggggcagcgctcacgtccatactga
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