Typha angustifolia (narrow-leaf cattail): 140776311
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Entry
140776311 CDS
T11061
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140776311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140776311
03041 Spliceosome [BR:
tang03041
]
140776311
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
140776311
Spliceosome [BR:
tang03041
]
Complex B
Other components
Prp19-related factors
140776311
Complex C
140776311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_19
TPR_12
TPR_2
TPR_15
TPR_8
PPR
ARM_TT21
ARM_TT21_C
TPR_5
Motif
Other DBs
NCBI-GeneID:
140776311
NCBI-ProteinID:
XP_072976076
LinkDB
All DBs
Position
14:join(876443..877620,877886..878211,878453..878637,878732..878902,878988..879188,880012..880263,880345..880761)
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AA seq
909 aa
AA seq
DB search
MAAVAMDISASASISVDLYPTQDDLPYEEEILREPFKLKGWWRYLVARSNSPFKKRSVIY
ERAIKALPGSYKLWHAYLRERLDAVRHLPISHHSYSSLNNTFERALVTMHKMPRVWIMYL
TSLTEQRLLTRARRAFDRALRALPVTQHDRIWPAYLALVGLPGVPVETAFRVYRRYLLFD
PSHVEEFIQFLLASGRWQEAADRLASVLNDDSFHSIKGKTRHQLWLELCDLLTRHATEVA
GLKVDPIIRGGIRKFTDEVGRLWTSLADYYVRRGLYEKARDIFEEGLTTVITVRDFSVIF
EAYAQFEQSALTAKLETAEEDSDSEVDDGEDEKGGKDGVAKLAKKFLDGFWLNDDDDTDL
RLARFERLFDRRPELLNSVLLRQNPHNVEQWHRRVKLFEGDPARQASTYVEAVKTVDPMK
AVGKPHTLWVAFARMYENHNRLDSAEEIFKKATQVNYKTVDHLASVWCEWAELELRHKNF
QKALELMRQATAEPSVEIKRRAAADGNEPVQMKLHKSLKLWSFYVDLEESLGTLESTRAV
YERILDLRIATPQIILNYAFFLEEHKYFEDAFKVYERGVKIFKYPHVRDIWVTYLSKFVK
RYGKAKLERARELFEHAVDQAPAEEVKPLYLQYAKLEEDYGLAKRAMNVYDQAVKAVPDN
EKLSMYEIYIARAAEIFGVPKTRQIYEQAIESGLPHNDVKTMSIKYAELERSLGEIDRAR
ALYIFAAGYADPRSDPNFWKKWKDFEIQHGNEDTFRDMLRISRTVSANYSQTHFILPEYL
MQKDQKLNLEEAVDTLKRAGVPEDEMAALERQLAPAASANLPAKDSGRMVNFISAGAEPQ
PDGGRNLIANKEDIELPEESESDDENIEIAQKDVPAAVFGDLAQHAATEDSEDNSRLGAL
ERIKRQRRQ
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggccgcagttgcaatggacatttccgcctccgcctccatctccgttgatctctacccg
acccaagacgatctcccctacgaggaggagattctccgcgagccgttcaagcttaagggg
tggtggcgctacctcgtcgcccgctccaattcccccttcaagaagcggtccgtcatctac
gagcgcgccatcaaggccctgccaggatcctacaagctctggcatgcctacctccgtgag
cgcctcgacgccgttcgccacctccccatttctcaccactcctactcctccctcaacaac
accttcgagcgcgccctcgtcaccatgcacaagatgccccgcgtctggatcatgtacctc
acgtccctcaccgagcagcgtttgctcactcgcgctcgccgagccttcgatcgcgccctc
cgcgccttacccgtgacccagcacgaccgtatctggccggcttacctggccctggtcggg
ctcccaggcgtccccgtcgagaccgcgttccgtgtctaccgaaggtacctccttttcgac
ccctcccacgtcgaggaattcatccagtttcttctcgcctccggacggtggcaggaggcc
gccgaccggctcgcctccgttctcaacgatgactccttccattctatcaagggcaagacg
cgccaccagctatggctcgaactctgcgatctcctcacgcggcatgccacggaggtcgct
ggcctcaaggtcgaccccatcattcgaggggggattcggaaatttaccgatgaggtcgga
cggctatggacctccctcgcggattattacgtccggagagggctttatgagaaggcgcgg
gatatctttgaggagggtctcaccaccgtcatcacggttagggattttagcgtcatcttt
gaggcgtatgcgcagttcgagcagagcgcgttgacggccaaacttgagacggcggaggaa
gactcggacagtgaggtggacgacggggaggatgagaaaggagggaaggatggggttgct
aagcttgcaaagaagtttctggatggcttctggttgaatgatgatgatgacactgatctc
aggttggcgaggttcgagcgcctatttgataggaggccggagctgcttaatagcgttctg
ctgcggcagaatcctcacaatgtcgagcagtggcacaggcgagtgaagctttttgagggt
gatcctgcaagacaagcatccacttatgttgaagcagtgaaaactgtggaccctatgaag
gcagtcggcaagccccatacactttgggttgcttttgcaaggatgtatgaaaaccacaat
cggttagacagtgctgaagagatcttcaaaaaggctacacaagtgaactacaagacagtt
gatcacttggcgagtgtttggtgtgaatgggcagaattggagttgaggcacaagaatttt
caaaaggctcttgaacttatgaggcaggccactgcagagccatcagtcgagattaagcga
agagctgctgctgatgggaatgaacctgttcagatgaagctgcataaatctttaaaacta
tggagtttttatgtggatttggaggagagtcttggaacactggaatccactcgagctgtt
tatgaaaggatacttgacttgagaattgccactccacaaataatacttaactatgcattt
tttcttgaggagcataagtactttgaagatgcatttaaggtgtatgaaagaggtgtaaag
atattcaagtatccacatgttcgagatatatgggttacttacctctccaaatttgtcaaa
agatatggaaaggcgaagctagaacgtgcgagggagctctttgagcatgcagttgaccag
gcgcctgctgaagaagtcaaaccactatatcttcaatatgcaaagttggaggaggattat
gggcttgcaaagcgtgctatgaacgtttatgaccaggcagtgaaggctgtcccggacaat
gagaagttgagcatgtatgaaatttatattgcacgggctgctgaaatttttggtgttcca
aaaacaaggcaaatatatgagcaagctattgaatctggactcccacataatgatgtgaaa
acaatgtcaataaagtatgcagaacttgaaagaagcctaggagaaattgatcgtgctcgt
gcattatatatttttgcagctggctatgcagatccaaggtctgatccaaacttttggaag
aaatggaaagattttgagattcagcatggtaatgaggataccttcagagatatgcttcgg
attagccgcactgtctctgctaactatagtcagacccatttcatactccctgagtatttg
atgcaaaaggatcaaaagctgaacctagaagaagcagttgacactctaaaacgagccggc
gtccctgaagatgaaatggctgccttagaaaggcaattggctcctgctgcatccgctaat
ttacctgctaaagatagcggcagaatggtgaattttataagtgctggagcagagccacag
cctgatggtgggaggaatctaattgcaaacaaggaggacattgaattgccggaggaaagt
gagtcagatgatgagaatattgaaattgcccaaaaggatgtcccggcggctgtcttcggt
gatcttgcacagcatgctgctacggaagatagtgaggataacagtcgtttaggcgctctt
gaaagaataaagaggcaaagacggcaataa
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