Typha angustifolia (narrow-leaf cattail): 140776361
Help
Entry
140776361 CDS
T11061
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
tang
Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140776361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tang03041
]
140776361
Enzymes [BR:
tang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140776361
Spliceosome [BR:
tang03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
140776361
Complex B
140776361
Complex C
U2 SnRNP specific factors
140776361
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
140776361
NCBI-ProteinID:
XP_072976138
LinkDB
All DBs
Position
14:join(1917574..1918189,1918683..1919911,1920305..1920347,1920501..1920894,1921079..1921130)
Genome browser
AA seq
777 aa
AA seq
DB search
MSKRKFGFEGFGINRPATYSFERSQPTQRLYVPPSSRGGGGGGGSHDNYEDHDLDDIEYD
NPEDAHNDGTGDGDGEIDPLDAFMESIHEEISAPRPQQASDVAKEKPDRFRDEDEEDDPV
ESFLRSKKDVGLALAADALHAGYNSDEEVYAAAKAVDAGMVEYDSDDNPVLLDKRKIEPI
PALDHSEIEYEPFNKDLYEEKSSISGLNEQDVADYRKSLAIRVSGFDVPKPIKLFEDCGF
STALMHAISKQGYEKPTSIQCQALPILLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE
LQKEEGPIGLICAPTRELAHQIYLEAKKFAKPHNLRVAAVYGGVSKLDQFKELKAGCEIV
VATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT
MPYKVERLAREILTDPIRVTVGEVGRANEDITQVVNVIPSDAEKMPWLLGRLPGMIDDGD
VLVFGSKKATVDEIEKQLIQKGFKVAALHGDKDQASRTETLQKFKSGIYHVLVATDVAAR
GLDIKSIKSVVNFDVARDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNGLIA
SGQDVSVELMDLAMKDGRFRAKRDSRKGSGGKKSGGRGKGGGGSGRGVRGVDFGLGIGYS
AEASNVVSQSVPSRSVAVNSLKTGMMQQFKSNFVAAAANSQSYDRTQSVTIPSARPVLRG
FVSGGTIGGEMYKTQPATSVTSPSNPGGNRSENGNQKNPESSRDRPRERKRPSGWDR
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaagtttggattcgagggtttcggcatcaatcgccctgcaacgtacagc
ttcgagcgctcccaacccactcaacgtctctatgttccaccctcctcccgcggcggcgga
ggcggtggcggatcccatgacaactacgaagatcacgacctcgacgatatcgagtacgac
aatcccgaggacgcccacaacgacggcaccggcgacggtgacggcgagatcgaccctctc
gacgccttcatggagagcatccacgaggagatcagcgccccgcggccgcagcaggcatcc
gacgtggcaaaagagaagccagataggtttagagacgaggatgaggaggatgaccccgtg
gagagcttcttgaggtctaaaaaagatgtcggcctggcattggcggcggacgcgttgcat
gccgggtacaattcggatgaagaggtttacgcggcggccaaggcggtggatgcggggatg
gtcgagtatgactctgatgataaccctgttttgttggataaaaggaaaattgagccgatt
ccagcgttggatcatagcgagatagagtacgagcccttcaataaggatctttatgaagag
aagtcctcaatatcaggactgaatgagcaggatgtggcagattataggaaaagtttggca
atacgtgtttcaggttttgatgtaccaaagccaatcaaactctttgaagattgtgggttt
tctactgctttaatgcatgctatttccaagcaaggttatgaaaaaccaacatcaatacag
tgccaggctctacctattttgttgtcaggtagagatatcatcggcattgccaaaactggt
tcaggtaaaactgcagcatttgtactccctatgattgttcatattatggatcagcctgaa
ctccagaaagaagaaggtccaataggactaatatgtgctcctaccagagaattggcacat
cagatatatctagaagccaagaagtttgctaaacctcataatttaagagttgctgctgtc
tatggtggagtttctaaacttgatcaatttaaagaacttaaagcaggctgtgagatagtt
gttgctactccagggagattaatagacttgctgaagatgaaggccttaaagatgtttagg
gcaacttacctggtgcttgatgaagcagaccgtatgtttgatcttggatttgagcctcaa
atacgatctatcgtaggtcaaattagaccagatcggcaaactttacttttctctgcaacc
atgccttacaaagtagaacgtttggcgagagagatactcacggatcctattagagttact
gtcggtgaggttggaagggccaatgaagacattacgcaagttgtcaatgtaattccttct
gatgcagagaagatgccctggcttcttgggcggctgcctggaatgattgatgatggagac
gttcttgtgtttggatctaaaaaggccactgttgatgaaattgaaaaacagttgattcaa
aaaggattcaaggttgcagcccttcacggggacaaagatcaagcctctcggacggaaaca
ctgcagaagttcaaatctgggatttatcatgtactagttgcaactgatgttgctgcccgt
gggcttgacataaaatcaatcaagtcagttgttaattttgatgttgcaagagacatggac
atgcatgtacatcgtattggacgaactggacgtgctggggacaaagatggtacagcctac
acccttattactcagaaggaggcacgttttgctggtgaattggtgaacggtttgattgct
tctggtcaagatgtgtctgttgaattgatggacctagctatgaaggatggcagatttagg
gcaaaacgtgattcaagaaaaggttcaggtgggaagaagagtggaggaagaggtaaaggt
ggtggtggcagtggaagaggcgtgcgtggtgttgattttggccttggtattggttatagc
gctgaggcatctaatgtagtatctcagtcagttccaagccgatctgttgctgtaaattcg
ttgaagacggggatgatgcagcagtttaaaagcaattttgttgctgccgcagcaaattcc
cagagttatgatagaactcagagtgttacaattcctagtgcaagaccggtgctacgtggt
tttgtttctggtggtacaattggtggagagatgtacaaaacacagccggccacttctgtt
acctctccctccaaccctggaggaaacagaagtgaaaatggaaatcagaagaatcctgaa
agttcacgagataggccgagagagagaaagcggccatctggatgggatcgttaa
DBGET
integrated database retrieval system
