Typha angustifolia (narrow-leaf cattail): 140776523
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Entry
140776523 CDS
T11061
Name
(RefSeq) histone-binding protein MSI1-like
KO
K10752
histone-binding protein RBBP4
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03082
ATP-dependent chromatin remodeling
tang03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
140776523
03083 Polycomb repressive complex
140776523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tang03036
]
140776523
Chromosome and associated proteins [BR:
tang03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
140776523
Histone modification proteins
HAT complexes
HATB complex
140776523
HDAC complexes
Sin3A-HDAC complex
140776523
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
140776523
PRC2.2
140776523
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
140776523
Heterochromatin formation proteins
Other heterochromatin formation proteins
140776523
Chromatin remodeling factors
NuRD complex
140776523
NuRF complex
140776523
NuRF complex (fruit fly)
140776523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
WD_LRWD1
ANAPC4_WD40
WD40_RFWD3
MIOS_WD40
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
RMC1_N
Beta-prop_RIG_1st
Beta-prop_SPT8
Beta-prop_NUP159_NUP214
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
DUF4891
Motif
Other DBs
NCBI-GeneID:
140776523
NCBI-ProteinID:
XP_072976359
LinkDB
All DBs
Position
2:join(7403761..7404405,7404974..7405126,7406117..7406241,7406922..7407017,7408191..7408422)
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AA seq
416 aa
AA seq
DB search
MEEGDESLAMTADEEFHVWKKNTPFLYDLVISHALEWPSLTAQWLPSSPLSSSSSSSSSS
NPIHRLLLGTHTAGDAPNFLMVADVHFPLPAPRDRRSPVADAPIPTVKIAQKVLHEGEVN
RARYMPQSPSTVATKTCQSEVHVFDLARRLPNPEEVGNGGADVVLRGHENEGYGLSWSSL
REGFLLSGSYDSKICLWDLKGGKGAAVLDAQNMYEAHEDLVEDVAWHLKDENLFGSVGDD
HKLMIWDLRSSTSKTPQHSIIAHQNEVNSLSFSPFNEWLLVTASADTTVNLFDLRKLTTS
LHTFSSHTSEVLQVEWSPKNETILASSAADKRVMVWDLSRIGDEQTEEDAEDGPPELLFS
HGGHRAKISEFSWNPTEELVIASVAEDNILQIWQVAESIYRDDCTAQNDDDLYAKT
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaggagacgaatccctcgccatgacggcggatgaggagttccatgtttggaag
aagaacactcctttcctctacgacctagtcatctcccacgcccttgagtggccatctctc
accgcccaatggctcccttcttcccccctctcctcctcctcctcctcttcttcctcttcc
aaccccatccatcgcctcctcctcggcacccacaccgccggagacgctcccaacttcctc
atggtcgccgacgtccacttccccctcccagcccctcgcgatcgccgctctccggtcgcc
gatgcgccgataccgacggtcaaaatcgcgcagaaggttctccacgagggggaggtcaac
cgtgctcgttacatgccgcagagcccctcgacagtggcgacgaagacttgccaatcggag
gtgcacgtcttcgaccttgctcgccggctgccgaatcctgaggaggtgggaaatggtggg
gctgacgttgtgctgagggggcatgagaacgagggatacgggctgtcgtggagttcgcta
agagaggggttccttttgagtgggtcttatgattccaagatttgcttgtgggatttaaaa
gggggaaaaggggcggcggttctcgacgctcagaatatgtatgaggctcatgaagattta
gttgaagatgttgcttggcacttaaaggatgagaatctatttggatctgttggagatgat
cataagttgatgatatgggacttgcgctcgtctacatcaaaaacacctcaacactctatt
attgctcaccaaaatgaggtcaattctttgtctttcagtccatttaacgagtggcttctg
gtgacggcatcggcagatacaactgttaacctgtttgatttgagaaagctcacaacaagt
ttgcatactttctccagtcacacgtcggaagtgcttcaggttgaatggagcccaaagaat
gaaacaatcttagcttcttctgcagctgacaagagagtgatggtttgggacctttccagg
attggagatgagcagacagaagaagatgcagaggatggcccgcccgagcttctattttct
catggaggtcacagagccaagatatcagaattttcatggaacccaaccgaggaactggtc
atcgccagcgttgcagaagataatatactccagatctggcaggtggcagaaagcatatat
cgagatgattgtacagcgcaaaatgatgatgatctatatgctaaaacatag
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integrated database retrieval system
