KEGG T11061: 140776613

Typha angustifolia (narrow-leaf cattail): 140776613

Entry

140776613         CDS       T11061

Name

(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1

K14402

cleavage and polyadenylation specificity factor subunit 2

Organism

tang Typha angustifolia (narrow-leaf cattail)

Pathway

tang03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:tang00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    140776613
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140776613
Messenger RNA biogenesis [BR:tang03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     140776613
    U7-dependent histone pre-mRNA processing factors
     140776613

SSDB

Motif

Pfam:

Lactamase_B_6 CPSF100_C Beta-Casp RMMBL Lactamase_B Lactamase_B_2

Other DBs

NCBI-GeneID:

140776613

NCBI-ProteinID:

XP_072976470

LinkDB

Position

2:complement(join(8993086..8993187,8993383..8993457,8993880..8994044,8994989..8995033,8995159..8995290,8996209..8996307,8997175..8997270,8997987..8998180,8998832..8999081,9000795..9000902,9000963..9001020,9001433..9001584,9001668..9001762,9002226..9002341,9002435..9002564,9002631..9002727,9002966..9003134,9003852..9004000))

AA seq 743 aa
MGTSVQVTPLCGVYSENPLCYLLSIDGFNFLMDCGWNDLFDPNLLQPLSRVATKIDAILL
SHPDILHLGALPYAMKQFGLSAPVYSTEPVYRLGLLTMYDHYLSRKQVSDFDLYSLDDVD
AAFQNVTRLKYSQNYHLSVDKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRK
ERQLNGTVLESFVRPAVLITDAYNALNNQLYKRQRDQEFIDTILKALTADGNVLLPVDTA
GRALEIILILEQYWAQQHLSFPIFFLTNVSTSTIDYVKSFLEWMSDSIAKSFEHTRDNAF
LLKHVSLIINKNELEKLTDVPKVVLASMASLEVGFSHDIFVELATDTKNLVLFTEKGQFG
TLARMLQVDPPPKAVKVNMSKRVPLVGDELKAYEEEQSRIKKEALKASLSKEEELRASHV
SDANVADPMVIDANSSHISSSVAGSRFGGFGGHLDILIDGFIAPSTSVAPMFPFFENKAE
WDDYGEVINPDNYIIKEEDMDQASMLGTGGGLDGKLDEGSAHLLLDSTPSKIVSNEMTVQ
VKCALTYMDFEGRSDGRSLKSILAHVAPLKLVLVHGSAEATEHLKMHCMKHVCPHVYAPQ
IEETIDVTSDLCAYKVQLSERLMSNVLFKKLGEYEISWVDAEIGKTNDMLTLLPLTSKPP
THKSVLVGDLKLADLKQFLANKGVQVEFAGGALRCGEYVTLRKVSDSVQKGGPGGAQQIV
IEGPLCEEYYKIREHLYSQFYLL

NT seq 2232 nt +upstreamnt +downstreamnt
atgggtacatcggtgcaggtgacgccactgtgcggcgtctacagcgagaacccgctgtgc
tatctcctctccatcgatggcttcaacttcctcatggactgcgggtggaacgacctcttc
gaccccaacctcctccaacccctctccagggttgcaacaaaaattgatgccatcttgcta
tcacatccagacattcttcatctaggtgctttgccatatgctatgaaacaatttggactc
tctgctccagtttattcaaccgaacctgtgtataggcttggtcttttgaccatgtatgat
cactatctttctcgaaaacaagtttcagattttgacttgtatagtctggatgatgttgat
gctgcttttcagaatgttactagattgaaatactcacagaattatcatctttcagtagat
aaaggagagggaattgttattgctcctcatgtggctggacatcttctgggaggtaccgtc
tggaagataacaaaagatggagaagatgtagtatatgcagttgacttcaaccatcgtaaa
gagcggcagttgaatgggactgttctagaatcttttgtacgaccagctgttctgataact
gatgcatataacgcattaaacaatcagctttacaagcgtcaaagggaccaagaattcatt
gatacaatactgaaagcactgacagctgatggcaatgtattgcttcctgttgatacagcc
gggagagcactggaaattattttgatactggagcagtactgggctcagcagcatttaagt
tttcccatcttctttttgacgaatgtttctacaagcacaattgattatgtcaagagtttc
cttgagtggatgagtgactcaatagcaaagtccttcgaacatacacgtgacaatgccttc
ctactaaagcatgttagtctcataatcaacaagaatgaacttgagaaactgactgatgtt
ccaaaggtagttttagcatccatggctagtctggaggtcggtttctctcatgatatattt
gttgaattggcgacagacacaaagaatctagtgctttttaccgaaaagggccagtttggc
acactagctcgtatgcttcaagtggatccgcctccaaaagctgtaaaggttaatatgagt
aagagagttcctttagttggcgatgaattgaaagcctatgaagaagaacaaagccgaata
aaaaaagaagccttaaaggctagtctcagcaaagaggaagaattaagggcttctcatgta
tcagatgctaatgtagctgatcccatggtgatcgatgccaactcatctcatatttcatcc
tctgtagctggctcgcgctttggtgggtttggtgggcatctggacattttgattgatgga
tttatcgctccatccacgagtgttgctcccatgtttcccttctttgagaataaagctgaa
tgggatgactatggtgaggtcatcaatcctgacaactacattattaaagaagaagacatg
gatcaggcatccatgcttggaactggtggtggtttagatggtaagcttgatgaaggctca
gctcacttgctcctggattcaacaccatcgaaaattgtttcaaatgaaatgaccgtgcaa
gtgaagtgtgctttgacttacatggactttgaaggtcggtctgatggtcgttctctgaaa
tcaattttagctcatgtggctcccttgaaacttgttctagtgcatggatcagcagaagct
actgagcatttgaagatgcactgcatgaagcatgtctgccctcatgtttatgccccacaa
attgaagaaactattgatgtgacttctgatttgtgtgcttacaaggtgcagctctcagag
aggttaatgagtaatgtgctttttaagaagttaggtgagtatgagatctcatgggtagat
gcggaaataggaaagacaaatgacatgcttacactgctccctcttacatcgaagccccca
actcacaaatctgttcttgtgggagatctgaaattggcagatttgaagcagtttcttgca
aacaaaggtgtccaggtagaatttgctggaggtgctctacggtgtggtgagtacgtcacc
ctgcgcaaggtcagtgattcggtccagaagggtggtcctggtggtgctcaacaaatagtt
attgaaggccccttgtgtgaagagtattacaaaattcgggagcatctatattcacagttt
tacttgctatag

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