Typha angustifolia (narrow-leaf cattail): 140776714
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Entry
140776714 CDS
T11061
Name
(RefSeq) phytochrome B-like isoform X1
KO
K12121
phytochrome B
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
140776714
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
PAS_4
HATPase_c
HisKA
PAS_9
PAS_8
PAS_3
DDE_Tnp_ISL3
Motif
Other DBs
NCBI-GeneID:
140776714
NCBI-ProteinID:
XP_072976630
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Position
14:join(1987613..1989656,1989975..1990782,1991658..1991951,1992612..1992831)
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AA seq
1121 aa
AA seq
DB search
MASGSRQQSQSSSGGGGSGESTSKAVAQYGLDASLHAVFEQSGEAGKSFDYFQSTYDATS
SSSISEDQIAAFLSKIQRGGLIQPFGCLLAVDESSFRVLAFSENAPEMLDVLLQCSVPSL
DDNTEPPLTIGTDVRGLFTNSSSILLERAFAARQVTLFNPLCLHSRTTGKPFYAILHRID
VGIVIDLEPGKKQDPALSITGAVQSQKLALHAISRLQALPSGDVQLLLDTIVSLVRELTG
YDRVMVYKFHEDEHGEVVAESKRQDLEPYIGLHYPSTDIPQAARFLFKQNRVRMIADCGA
VPVRVIQDESLTQPLCLVGSTLRAPHECHPQYMANMGSIASLVMAVVTNSSDEEGRKNLV
KLWGLVVCHHTSPRCISFPLRCACEFLMQSIGLQLNMELQLALQLSEKRILRTQTLLCDM
LLRDSPTGIVTQSPSIMDLVKCDGAALYYQGTYYPLGVAPTEAQVKDIIRWLSECRGDST
GLTTDSLADAEYPGAAALGNAVCGMAVACITPKDYLFWFRSHTAKDIRWGGAKHYPEEKD
DGQQMHPRSSFKAFLEVVKCRSMPWENAEMDAIHSLQLILRDAFRDAAEASSKSKVTIDD
LELQGIEELRTVAKEMVRLIETATAPIFAVDSNGRINGWNAKIAELTGLPFEEATGKSLV
HDLVYEGCEDVVDKLLYRALRGEEDKRVEIKLKTFGSQRSKNAIFVIVNACSSRDYTNNV
VGVCFVGQDVTGQKVVMDKFIHIQGDYKATVHSPNPMIPPIFSSDGNACCSEWNPGMEKL
TGWLREEIIGKFLVGEVFGSCCRLKGPDALTKFMIVLHNAIGGKETDKFPFSFYHKNGKH
VQALLTAHTTSDINGQVIGAFCFLQIASPELQQSLEVQRQQEKKCYARMNKLAFISQEIK
NPLSGIRFTNSLLEMAELNDDQKQFLETSASCEGQLLKIIKDADLQTIDSGSLVLDKGEF
LVGRVINAVVSQVMILVRERGLKLIRDIPEEIKDISVYGDQFRIQQVLAEFLLNMVQRAP
PQSGWVEIQASLNWKQNSVGNVTVLLLFRFTCPGEGLPPEVVQDMFHNSHWMTQEGLGLS
MCRKILKSMDGEVQYVRESERCFFLTMIELPASRRGGSRKD
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atggcctccggtagtcgccagcaatcccagtcctcctcaggaggcggcggcagcggcgag
tcgactagcaaggccgtggctcaatacggcctcgacgcaagtcttcatgccgtctttgag
cagtcaggcgaggcggggaaatccttcgactacttccaatccacctacgacgctacgtcg
tcgtcctccatctccgaggaccagatcgccgccttcctctccaagatccagcgcggcggc
cttatccagcccttcggttgcctcctcgccgtcgatgagtcctctttccgtgtcctcgcc
ttcagtgagaacgcccctgaaatgctcgacgttttgcttcaatgctccgtcccctctcta
gatgataacaccgaaccacccctcactattggcaccgatgtgcgtggcctcttcaccaat
tcaagctcgattcttcttgagcgcgccttcgccgctcgccaggtcacccttttcaaccct
ttatgtctacattcaagaacaaccggtaagccattctacgcaattctccaccgcattgat
gtcgggattgtgatcgaccttgagccggggaaaaagcaagacccggcgctctctatcacc
ggcgcggtccagtcacagaagctcgctcttcatgccatctcacgcctccaggcgcttccc
agtggagacgtccaattactcttggacaccatcgtcagtctcgtccgcgagctcacaggc
tacgaccgcgtcatggtgtacaagttccacgaggacgagcatggcgaggtggtcgcagaa
agcaaaagacaggatcttgaaccttacattggccttcattacccttccaccgacatccca
caggctgcgcgttttctttttaagcagaacagggtgcggatgatcgccgattgcggtgcc
gtccctgttcgggtgatccaagatgagagcttgacgcagccactttgtcttgttgggtcg
acactgcgggcgccccacgagtgccaccctcagtacatggcaaacatgggatcgatcgca
tcgcttgttatggctgtcgtcactaacagcagcgacgaggaggggaggaagaatttagtg
aaattgtggggtcttgtggtgtgtcaccacacctcgccaaggtgcatatctttccctctg
cgatgtgcttgtgaattcctaatgcagtcaattgggcttcagctcaacatggagttgcag
ttagctctgcagctatcagagaagcgcatcctgaggactcagacgcttttgtgtgacatg
ctgctccgtgactctccaaccggcattgtcacccagagtcctagtattatggaccttgtg
aagtgtgatggagccgcattgtactaccaggggacgtattacccgctcggtgttgcccca
acggaagctcaggttaaggatatcatcagatggttatcggagtgccgtggggattccact
ggtctgaccaccgacagcttggccgatgctgagtatcctggtgctgcagctcttggcaat
gcggtctgtggaatggccgtggcttgtatcacgccgaaagattacttgttctggtttagg
tcacacacagccaaagatatcagatggggtggtgcgaagcattatccagaggagaaggat
gatgggcagcagatgcaccctcgctcttcgtttaaggctttcctcgaggtagtcaagtgt
aggagcatgccgtgggaaaatgcagagatggacgcaatacactcactgcagcttattttg
agggacgcctttagggatgctgcagaggcgtccagtaagtcaaaggtcactatcgatgat
ttggagttgcaaggcatagaagagcttagaactgttgcaaaggagatggtcaggttgata
gagacagcaactgcaccaatttttgcggttgattcgaatggacgtataaatggttggaat
gcgaagatcgctgaattgacaggtctcccatttgaggaagctacgggcaaatcactggtt
catgatcttgtatatgagggatgcgaggatgttgtagacaagcttctctaccgggctttg
agaggtgaagaagataaacgtgtagagataaagctgaagacatttggctcacagcgatcc
aaaaatgctatctttgtgatagtcaatgcctgttccagtagggattacacaaacaacgtt
gtaggtgtatgttttgttggccaggatgttactgggcagaaagtggtcatggataagttc
attcatatacaaggtgattacaaagctactgtgcacagtcctaaccctatgataccccct
atattttcttcggatgggaatgcctgctgctcagaatggaatccaggaatggaaaagctt
actggttggctaagagaggaaataattgggaaatttctggttggagaggtatttggcagt
tgctgtcgacttaagggtccagacgcactcacaaaattcatgatcgtcctccacaatgct
ataggaggaaaggaaacagacaaatttcctttttccttctatcacaagaatggcaagcat
gtccaggctctattgacagcgcacacgacaagtgacatcaatggtcaagtaattggagct
ttctgcttcttgcagattgcaagtcccgaattgcaacaatctcttgaagttcagaggcaa
caagaaaagaaatgctatgcaagaatgaataagttggctttcatttcccaagagattaag
aatccactcagtggtatccgatttacgaactctctgttggagatggcagaattgaatgac
gatcagaagcagtttctggagacaagtgcttcttgtgaagggcagctgctgaaaatcata
aaggatgctgatctgcaaactatcgactctggctccttggtgcttgacaaaggtgaattt
ttagttggacgtgttataaatgctgttgtaagccaagtcatgattttggtgagagaaaga
ggcttaaaattgattcgggatattcctgaggaaataaaagatatatctgtatatggtgat
cagttcagaattcagcaagttttagctgaatttttgctgaacatggtgcagcgtgcaccg
ccacaaagtggttgggtagaaatccaagctagcctgaattggaagcagaattctgttgga
aatgtaacagtacttctccttttcaggtttacttgccctggtgagggtcttcctccagaa
gtcgtacaagacatgtttcataattcccactggatgacccaagaaggtcttggactaagt
atgtgccggaagatccttaagtcaatggatggtgaggtccaatatgtcagggagtcggaa
agatgcttcttcctcaccatgattgaactgcctgcatcccggagaggtggaagcagaaag
gactaa
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