Typha angustifolia (narrow-leaf cattail): 140776782
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Entry
140776782 CDS
T11061
Name
(RefSeq) uncharacterized protein
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
140776782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tang03009
]
140776782
Ribosome biogenesis [BR:
tang03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
140776782
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
Utp12
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_ACSF4
Beta-prop_WDR3_2nd
WDR90_beta-prop_4th
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
EIF3I
Beta-prop_VPS8
WD40_MABP1-WDR62_2nd
PQQ_2
TFIIIC_delta
Beta-prop_IFT122_1st
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
140776782
NCBI-ProteinID:
XP_072976739
LinkDB
All DBs
Position
14:join(1573276..1573365,1573449..1573592,1573690..1573805,1574289..1574443,1575839..1575927,1576068..1576605,1576855..1577016,1577418..1577572,1577721..1577800,1577895..1578006,1578187..1578261,1578344..1578514)
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AA seq
628 aa
AA seq
DB search
MSSPNIRDLLTSFSPSLDFFAITGGDGRIKIWDTVKGQLQTEFADISPSTDLGLLSEAKR
GHLSLDYTCMKWVQLESKKKRKAGGSLLVLGTGSGDVLALDVSAGQLRWKVNDCHPGGVT
AVSFSVHRLCIYTAGVDGMVCQIDTSTGSLLGRFKSSTKAISSLSISSDGKILATAAGQL
KTFNCSNNKKIQKFSGHPVSVRCMIFSEDGQHILSSGVGERYVAIWKIGRSETRSASCIL
SMEHPAIFLDSKRGHTDGSAEGGLYVLAISEMGICYFWHGSSIDDLRNRKATKITLSESS
IPKVNQGFTIFAAKLQGIVKPDSGQVLLAYGSVVKPSFDKILVQYGSDINMKASNVGVLL
QMNHSAIPQKGQTAQMHVTALGRANAEDAILPLPKLYAHDKKRKGMTDAGENIKTVMTDH
VSSMTRSTDKKVILQRREDDDAISIEDKMREFGILGSKVDLSTESGPGPLTNYSLDINAP
AKKMRAHILSMNPSDAYQLLRILVSSWKTRSASSKLIIPWIYCLLVNHGRFILSQDSSSQ
MLDDLQRMMASKCAAAEHLLKLSGRFQLMTAQIDKAGKDTAKQEAGEIQDEGEDEDEEEE
EEEDVDELVYGQEEESSESSDDAEEHLR
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgagctctcccaacataagagacctcctcacgtcattcagcccctctttggatttcttt
gccatcaccggaggtgatggacgaattaagatttgggacaccgtaaaagggcagttgcag
accgagtttgctgatatctccccgtctactgatttgggattgctttcggaagcgaaaagg
ggccatctttctctggattacacttgcatgaagtgggtgcagctggaaagcaagaagaaa
agaaaggccggaggttctctcttggtgctcggaacggggagtggtgatgttttagcactt
gatgtctctgcagggcaattgaggtggaaagttaatgactgtcatcctgggggtgtgacg
gctgtttccttttcagtacatcgtttgtgcatatacacagctggtgttgatggtatggtc
tgccagattgatacatcaacagggagcctgttgggcaggtttaaatcatctacaaaagca
atatcctctttgtctatttcttcagatggaaagatactggccactgctgcagggcagctg
aagactttcaattgttctaataacaagaagattcaaaagttttctggccatccagtgtct
gttagatgcatgattttcagtgaagatgggcagcatatcctatcatctggagttggtgag
agatatgttgccatctggaaaataggccgcagtgaaactcggagtgcgagctgcattctc
tcaatggagcatccagccatattcctggacagcaaacgtgggcatactgatggtagtgct
gaagggggactatatgtattggctatttcagaaatgggtatttgttatttctggcatgga
agtagcatagatgacttgcgaaatagaaaggctacaaagattacactgtctgagtcttcc
atcccaaaagtcaaccagggtttcacaatatttgctgcaaaacttcaaggcatagtcaaa
cctgattctggacaagtccttctggcatatggttctgttgtgaagccatcttttgataaa
attttggtgcagtatggctcagacataaacatgaaggcatctaatgttggggttctctta
cagatgaaccattcggccatccctcaaaaaggccaaactgcacaaatgcacgttactgca
ctaggccgtgcaaatgcagaagatgctatacttcctcttccaaagctatatgcgcatgac
aagaaaagaaaaggcatgacagatgcaggtgaaaatattaagacagtaatgactgatcac
gtcagcagtatgactcggtctacagataagaaagttatacttcaaagaagggaagatgat
gatgctatatccattgaggataagatgcgagaatttgggattcttggtagtaaagttgat
ctaagcactgaaagcggtcctggcccccttactaattattctcttgacattaacgcccca
gcaaagaagatgcgagcacatatcttgtccatgaacccaagtgatgcttaccaacttttg
agaatcttagtgtcttcttggaaaacaaggtcagctagctcaaagcttatcataccatgg
atatattgcttgctggtcaaccatggtcgttttatcttatctcaggattcatcttcacaa
atgcttgatgatttacagaggatgatggcatcaaaatgtgcagctgctgaacatttacta
aagttatctggtcgttttcagctcatgacagcacagattgataaggctggcaaagatacc
gctaaacaagaagctggtgagatccaggacgaaggtgaagatgaggacgaagaagaagag
gaagaggaagatgttgacgaattggtttatgggcaagaagaggaatcttctgaaagtagt
gatgatgctgaagagcatctgcgataa
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