KEGG   Typha angustifolia (narrow-leaf cattail): 140777238
Entry
140777238         CDS       T11061                                 
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140777238
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140777238
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     140777238
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     140777238
SSDB
Motif
Pfam: EDC4_C Ge1_WD40 WD40 WD40_WDHD1_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML_2 Beta-prop_TEP1_C WDR55 GerPC Beta-prop_Vps41 DUF445
Other DBs
NCBI-GeneID: 140777238
NCBI-ProteinID: XP_072977304
LinkDB
Position
15:join(22588451..22589227,22590680..22590729,22590812..22590968,22591145..22591363,22593046..22593174,22593826..22595451,22596704..22597063,22597152..22597271,22597622..22597792,22597911..22598072,22598230..22598373,22598523..22598831)
AA seq 1407 aa
MASPAGNPNQSGPFELSKLFKPPPNSNPNPNPSAPPPFPPPSSYAAGPPPFQAAPQPPSG
PFSYPPTTPPFHHRPFLHYPQEPLHRPTISYQTPPPQLPNPNPNPNAGARLMQLLGNTGT
THLESAVSMPPSSIPPEFAGPATANAPILHAIPSAPPAAMPGFPQPPPARMPSSKMPRGR
HLGSGDRAVYDVDSRLPGESQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGN
IRVLNIHTALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRVFIWKIDEGPDEENKPQI
TGKVVTAIQILGYGDSYHPRICWHSHKQEILFVGVGNRVLKIDTTKVGRGKEFSAEEPLK
CPIEKLIDGVQLIGQHDGDVTDLSISQWMITRLVSASKDGTVKIWEDRKSVPLATLRPHD
GHAVNSVSFLTSPDRPDHINLITAGPLNREVKIWSSSSEEGWLLPSDSESWHCTQTLDLR
SSSEHRLDEAFFNQLVVLPRATLIILANAKKNAIYAVHIEYGLCPASTRMDFIADFTVAM
PILSLTGTSNSLPDGEQVVQVYCVQTMAIQQYALDLSQCLPPLSDTAGLGRDPSISRALD
SRNLSGAAEPSGGQNVTEPSAGSTSPKPSPTDSPTESATARSNHVISLSSEFINSRDVST
SNTEVKPSAPPIMSADADAAQILNSPVPLKLDPAGRLPSLESPSKGSEQVPSLGDRDGKH
SVLDYPADRSSESVVTSIPDASPTSDNLGKDETRDGQNDILLVPNPHMICNLGNNTKHLI
TPSEILSGVLTSSKSPHVNQGLKGDEMKIQDVISSNNSESSEVEAKAVDESKLNQNVHLN
SRKEPQVISDENKEQTSGVSGLNLDIVNGAPTPADTYNVDKSHCLDGNAAPKSSEQSSAT
AEGENRGRLKDTSEKVEEYAVGIVPEPPATKEKQQKAKISQESGSSSPSLSPFNSIDSSN
EPGSSESTPTDVVLPQISTIQEMLNQIITVQKDLQKQLSVMVAVPVTKEGKRVEAALGRS
MEKTVKANVDALWARLQEENAKREKVERDRVQQITNLITNYMNKDLPGILERALKKEMSA
LGPAVARAITPVIEKTISAAITDSFQKGVGDKAVNQLDKSVNSKLEATVARQIQAQFQTS
GKQALQESLRSCLESSVIPAFEQSCRVMFEQVDASFQKGMSEHTAATQKQFEAGHTPLAL
TLREAINSASSITQNLTTELVDGQRKLLALVAAGNTKALNPIAAQANNGPMTGLPEMALS
VQQVEAPLDPTKELSRLISERKYEEAFTMALQRSDVSLVSWLCSQVDLRAICSMVPLPLN
QGVLLALLQQLACDISKETARKVVWMRDVAIAINPTDPMISMHVRPIFEQVYSILAHHRS
LPTTTVAEIADIKLVMHVITSVLMSCK
NT seq 4224 nt   +upstreamnt  +downstreamnt
atggcttctcctgccggaaatcctaaccaatccgggcccttcgagctcagcaagctcttc
aagccacctccaaactctaacccaaaccctaaccctagcgctcctccacccttccctcct
ccgtcatcgtacgccgctgggcctccgccgttccaggcggcaccgcagcctccatcgggc
cccttctcctacccccctactactcctcccttccaccatcgtcctttcctccactacccc
caagaacccctccaccgcccgactatatcctaccaaactccacctcctcaactcccaaac
cctaaccctaaccctaacgccggggcccgcctcatgcaactcctcggtaacaccggcacc
acccatctcgaatcggcggtctcgatgcctccgtcttctattcctccagagttcgctggg
ccagcaacagcgaacgcgccgattcttcatgcgatcccgtcggccccgccggcggcgatg
cctgggttcccccagccgcctccggcgaggatgcccagtagtaagatgccgaggggccga
cacctcggcagtggggatagggcggtgtatgatgttgactcgaggctgccaggggagtcg
cagccgcctcagctcgaggtgacaccgatcaccaaatatacatcagaccctggtcttgtc
cttgggcggcagatcgcggtgaaccgtacttacattgtctacgggcttaagctcgggaat
atccgagtgcttaatatccacacagcattgaggtctctcctccggggccacactcagagg
gttacagacatggctttctttgctgaagatgttcaccttttagcaagtgcaagcgtagat
gggagggttttcatatggaagattgatgagggacccgacgaggagaataagccacaaata
acaggaaaagttgttactgctatccaaattttaggctatggtgattcgtatcatccaaga
atctgttggcactctcacaaacaagaaattttgtttgtcggagttgggaaccgtgtgcta
aagatcgatacaacaaaagtgggaagaggaaaagaattttctgcagaggaaccacttaaa
tgccctattgagaagctgatagatggagtacagttgattggtcaacatgatggagatgtg
acagatttatccatctctcagtggatgataactcgtttggtttcagcatcaaaagatggc
acggtaaagatctgggaagatcggaaatcagtgccccttgctacactgaggccacacgat
ggtcatgctgtcaactcagtttcattccttacatcacctgaccgccctgatcacattaat
cttataacagcgggccctctgaatcgagaagtgaaaatttggtcatcttccagtgaagaa
ggttggctattgccaagtgattctgaatcatggcattgtactcaaacattggatttgagg
agttcttcagaacatcggttggatgaagcatttttcaaccaacttgtggttttgcctcgg
gcaaccctcataatacttgcgaatgcaaaaaagaatgctatatatgcagttcatattgag
tatggtctttgtcctgcttctacacgcatggacttcattgcagattttactgttgcaatg
cctattttgagtctcactggaacaagcaattcccttcctgatggcgagcaagttgttcaa
gtttattgtgtgcagacaatggctattcagcaatatgctttggatttgtcacaatgtttg
cctccgttaagtgatactgctggactggggagggacccatcaatttctcgtgctcttgat
tcacgtaatttatcaggagcagctgagccttctggtggacagaatgttactgagccttct
gctggaagtacttcaccaaaaccttcgccaactgatagccccactgagagtgcaactgca
cgttcgaatcatgtgatctcactttcttcagagttcatcaatagtcgtgatgtgtctaca
tcaaatactgaagttaaaccatctgctcctccaattatgagtgcagatgctgatgctgcg
caaattttgaactcacctgttcctctgaaattggatcctgcaggaaggctaccttccttg
gagagcccttcaaaaggttctgagcaggttccatcacttggcgatcgtgatggcaagcat
tcagttttggactatccagctgacaggagttcggaatctgttgtcactagtatacctgat
gcttcccctacaagtgataacttagggaaggatgaaactagagatggtcaaaatgatatt
ttattggtcccaaatcctcacatgatttgcaatctaggtaacaacacaaaacacctaata
actccatcagaaatcttatcaggtgtgttaacttcctccaaaagccctcatgtcaaccaa
ggcctgaaaggtgatgaaatgaaaattcaagatgtgatttccagtaacaactctgagagc
tcagaagtagaagcaaaagctgtagatgagagtaagttaaatcaaaatgtgcacctcaac
tctaggaaagagcctcaagtcatttccgatgagaataaggagcaaacctccggggtttcg
ggactaaatcttgatatagtcaatggagctcctacaccagcagacacttacaatgtggac
aaatctcactgtttagatggtaatgctgctcccaagtcatccgagcagtcttctgctact
gctgaaggagaaaatcggggtcgcttaaaagatacatctgaaaaggttgaagaatatgct
gttggtatagtaccagaacctccagctacaaaggagaagcagcagaaagcaaaaatatcg
caagaatctggttcatcatccccttctttgagcccttttaactctatcgattcatcaaat
gaacccggaagtagcgaaagtactcctactgatgttgttctcccccaaatttcgaccatt
caagaaatgctgaaccagattattacagtgcaaaaggatttgcaaaagcaattgtcagtg
atggttgctgttcctgttaccaaggaagggaaaagagtggaagcagccttgggccggagc
atggagaaaacagtcaaggctaatgtagatgctctgtgggcccggcttcaggaggaaaat
gcaaaacgtgagaaagttgagagggaccgggtccagcaaataactaatctgatcacaaac
tatatgaacaaggatctgcctggcatattggaaagggcattgaagaaggaaatgtcggct
ctggggccagctgtagctcgggcaatcacacctgttattgagaagaccatatctgcagct
ataactgactcattccagaaaggggtgggggataaggcagtgaatcaattggacaagtct
gtcaattcgaaacttgaagctacggtggctaggcaaatccaagcacagtttcaaacttca
ggcaaacaagctcttcaggaatcattacgttcttgtttggaatcatcagttattcctgca
tttgagcaatcttgtcgagtgatgtttgagcaagttgatgcgtcattccagaaaggcatg
tctgaacatacagctgctactcagaagcaatttgaggcagggcatactccgttggcactt
actttaagggaagctatcaactctgcatcatcaataactcaaaatctcaccactgaatta
gttgatgggcagcgcaaacttttggctcttgttgcagcaggaaacaccaaagcactaaat
cctattgccgcgcaggcaaacaatggccccatgaccggtcttcctgagatggcattatct
gttcagcaggttgaggcaccccttgatccgacgaaggaattaagcagactgatatcagaa
cggaagtatgaggaagcattcacaatggctcttcaaagaagtgatgtctccctcgtatct
tggttatgctctcaggttgatttgcgtgcgatatgctccatggtgccacttcctctaaat
caaggagttctcctggcacttctgcagcaactagcatgcgatatcagcaaagagacagca
cggaaggttgtgtggatgagggatgtagccattgcgattaacccgacagatccgatgatt
tcaatgcatgtacggccaatattcgagcaagtctacagcatactggctcaccacagatcg
ctccccacaaccacagtggctgaaattgcagatattaagctagtcatgcacgtcataaca
tcggtcctgatgagctgtaaatga

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