Typha angustifolia (narrow-leaf cattail): 140777520
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Entry
140777520 CDS
T11061
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140777520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tang03041
]
140777520
Enzymes [BR:
tang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140777520
Spliceosome [BR:
tang03041
]
Complex C
Other components
Step II factors
140777520
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
nSTAND3
Sigma54_activ_2
AAA_16
ABC_tran
TsaE
PhoH
nSTAND_NTPase5
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
140777520
NCBI-ProteinID:
XP_072977780
LinkDB
All DBs
Position
15:complement(join(15375784..15376177,15378880..15382085))
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AA seq
1199 aa
AA seq
DB search
MAEVEDASDGLKKLEYLSLVSKVCTELESHVGCGDKVLAEFITELGRDSETVDEFDAKLK
ANGAEMPDYFVRTLLTIIHAILPPKPHANSGSSNKKKPSTAFPALSRPDDPDHAKQLRLE
IERDAEVREEADGRSHRDGEDDHRRHRRDRGRDRDLERDHRSDRDRDRGQERRGDRDWGR
EHRNDRDRDRDRNRDRDRDRDRDKDRNHTRDSMYDRDSRAYDDEEEEDKGSRNHNTSHRQ
SDELELYRVYKGRVSRVMDTGCFVQLTDLRGKEGLVHISQISSKRVANAKEAVKRDQEVF
VKVISVSGQKLSLSMRDVDQKTGKDLLPMRKRTEDEALRANPSSRSNGPTMRLGLSGITI
VEEDESGSSRRPLKRMSSPEKWEAKQLIASGVLDVREHPMFDDDGDGMLYQEEGAEEELE
IELNEDEPAFLQGQSRFSIDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTML
DSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSIQ
EQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTGGKIGCTQPR
RVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREILVDETLSQY
SVVMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPG
RTFPVEILYTKQPETDYLDAALITVLQIHLTEPEGDILVFLTGQEEIDHACQSLYERMKG
LGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIYYVVDPGF
AKQNVYNPKQGLDSLIITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPE
IQRINLGLTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRK
MAEFPLEPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPE
GDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDRYKLDVVSAGKN
FTKIRKAITAGFFFHASRKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTK
EYMREVTVIDPKWLVELAPRFYKSSDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagtggaagacgcaagcgacggcctaaagaagcttgagtacctctccctcgtc
tccaaagtctgcaccgagctcgagtcccacgtcggctgcggcgacaaggtcctcgccgag
ttcatcactgagctcggccgcgactccgagaccgtcgacgagttcgacgccaagctcaag
gccaatggcgccgagatgcctgattacttcgtccgcacccttctcaccatcatccacgct
atcctccctccaaaaccccatgctaactccggatccagtaacaaaaagaagccctccacc
gccttccctgccctctcccgccccgatgaccctgatcacgccaagcagctccgtctcgag
atcgagcgcgatgctgaggtgagagaggaagctgatggccgctcccaccgcgacggtgag
gacgaccaccgccggcatcgacgggaccgaggccgtgatcgggatcttgagcgggaccat
cgaagtgatagggaccgggatcggggtcaggagcgtcgaggtgacagagattggggccgg
gagcatcggaatgatcgagatagagatcgagatagaaatcgagatcgagatagagataga
gacagagacaaggataggaaccatacaagggatagcatgtatgacagggattctagggca
tatgatgatgaagaggaggaggataagggatcgagaaaccataatactagtcaccggcag
tctgacgagcttgagctctacagggtgtacaagggccgggtttctcgcgtgatggatact
ggatgcttcgtccagctaacagatctccgtggcaaggaagggctcgtccacatatcacaa
atttccagcaaaagagttgcgaacgcaaaggaagcagtgaagcgtgaccaggaggtgttt
gtcaaggtgatctcagtgtctgggcagaaacttagtttgtcgatgagggatgttgaccag
aaaactggaaaggatttgcttcccatgaggaagagaacagaggacgaagcattgagggca
aacccttctagcaggagcaatgggcctacaatgaggttgggcctctcggggattactatt
gtggaggaagatgagagtggttcgtcaaggcgtccgcttaagaggatgagctcaccagag
aagtgggaagcgaagcaactgattgcatcgggggtgttggatgtccgggagcacccgatg
tttgatgatgacggtgatggaatgttgtatcaggaagagggggcggaggaggagcttgag
attgagctcaatgaggatgagcctgccttcttgcaaggtcagagtcggttctctattgac
atgtctccagttaagatttttaagaaccctgagggctccttgagccgtgcagcggctctc
cagtcggctcttattaaagagaggagggaagtcagggagcagcagcagaggactatgctg
gactccatcccgaaggatctaaatcgaccatgggaggacccgatgccagaaactggtgaa
aggcacctggctcaggaacttaggggtgtgggtttgtcggcctatgacatgcctgagtgg
aagaaagatgcatatgggaaggctttaacctttgggcagaggtctaagttatctattcag
gagcagaggcagagccttcccatctacaaactgaagaaggagctgattcaagctgttcac
gataatcaagtattggttgttattggtgagactggttctggaaagactacacaagtgacc
caatatctggctgaggctggttacactacaggggggaaaattgggtgcacgcagcctcgt
agggtggcagcgacgtcggtcgccaagagggttgctgaagagtttgggtgtcgcttgggg
gaggaagtgggatatgctattcgatttgaggactgcactgggccagagacagtgatcaag
tatatgactgatggtatgctccttagggagattttagttgatgaaaccctttctcagtat
tctgttgtcatgctggatgaagctcatgagaggactatccacacagatgttctttttggt
ttgctaaaacagcttgtgaagcgcaggcctgaccttcggttgatagttacttctgctacc
ctcgatgcagagaagttctctggttacttctttaactgcaatattttcactattccagga
agaacatttccagtggagatcctttacacaaagcagcctgaaactgattacttagatgca
gctttaattactgttttacagatccacttgacagaacctgaaggtgacattcttgtcttc
ttgactggccaagaagagattgatcatgcttgtcaatctctatatgagagaatgaaagga
ctggggaagaatgttccagagttgataattttgcctgtctacagtgctcttcctagtgaa
atgcagtcgaggatttttgaaccagctcctccagggaagaggaaggtcgttgtggccact
aatattgctgaggcatctttgacgatagatgggatatattatgttgttgatcctggtttt
gcaaagcagaatgtatataacccgaaacaagggcttgattcactgatcattactccaatc
tcacaggcatcggccaagcaacgagctggccgtgctgggcgtacgggtcctgggaaatgt
taccggctatatactgaaagtgcctatcgtaatgaaatgtcaccgaccagcattccagaa
atccaacggatcaatctcgggttaacgacactcaatatgaaggctatggggattaatgac
ctattatcttttgattttatggaccccccttcacctcaagccctcatctctgcaatggaa
caattgtatagtcttggagcactagatgaagaggggcttctcacaaaattgggtagaaaa
atggctgaatttccactagagccacctctatcaaagatgcttctggccagcgtggacctt
ggctgcagcgatgagattctgactattattgcaatgattcagactggtaatattttttat
aggccaagagaaaaacaagcccaagcagatcagaaaagagcaaagttctttcagccagaa
ggggaccacttaacactacttgctgtttatgaggcttggaaggcaaagaatttttcagga
ccttggtgttttgagaactttgtgcagtcacgatcccttaggagagcacaagatgtcagg
aaacagcttcttactatcatggatagatataaattggatgttgtctctgctggcaaaaac
tttaccaagatccgaaaggcaataacagcaggattcttctttcatgcctctaggaaggac
ccacaagaaggttacagaacattagtcgagaatcagccggtatacattcacccaagtagt
gctctattccagaggcagcctgactgggtgatatacaatgagttagtaatgacgaccaag
gaatacatgagggaggtgacagtcatcgaccccaaatggctggtggagttggccccaagg
ttttacaagtcttcggatccaacgaaaatgagcaaacggaagcggcaggagcgtatcgaa
cctctgtacgaccgatatcacgagcccaactcttggcgtctgagcaaacgtcgagcttga
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integrated database retrieval system
