KEGG   Typha angustifolia (narrow-leaf cattail): 140777659
Entry
140777659         CDS       T11061                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140777659
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140777659
   03012 Translation factors [BR:tang03012]
    140777659
Enzymes [BR:tang01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     140777659
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     140777659
Translation factors [BR:tang03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    140777659
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD dsrm AAA_22 nSTAND3 T2SSE AAA_19 ATPase AAA_16 AAA_23 ABC_tran PhoH Myosin_head
Other DBs
NCBI-GeneID: 140777659
NCBI-ProteinID: XP_072978026
LinkDB
Position
15:join(120131..120358,120767..120921,121043..121130,121247..121483,121878..121973,122208..122396,122517..122676,122792..122922,123461..123631,123709..123981,124097..124291,124417..124620,125197..125266,125456..125604,125800..126108,126213..126272,126383..126535,126609..126719,127101..127589)
AA seq 1155 aa
MHRRGLWLGLGFLVRSGRLAAAPLDCRPGALHCLLRSLLPSSNDVGVPWWIGRGRVYCGY
AVEQFSDDEYEYEDQKPSSSVANIDEWRWKLSMLLRSTDEQEIISRDKRDRRDYEQISSL
ARRMGLYSELYGKVVVGSKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLMEEHLDRML
LTAERASDKLEHASAIEDIDDINPDENQDSLVDRSVMEKILQRKSWRMQNLQRTWQESPE
GIKMLNFRKSLPAYKEKERLLSAIARNQVIVISGETGCGKTTQLPQYVLESEIESGRGAF
CNIICTQPRRISAIAVAERVSTERGENLGESVGYKVRLEGMKGKNTHLLFCTSGILLRRL
LGDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNYFG
GAPTIHIPGFTYPVRAHFLEEILEKTGYKLSSSNQMDDYGQDKFWKTQRQLMPRKRKNQI
TALVEDSLKISSFENYTSRTRDSLSSWNPDCIGFNLIEAVLCHICRKERSGAVLVFMTGW
DDISCLRDQLKAHPLLGDPNRVLLLACHGSMATSEQKLIFERPPPNVRKIVLATNMAEAS
ITINDIVFVVDCGKAKETSYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPR
CVYDAFADYQLPELLRTPLNSLCLQIKSLQLGTIGEFLSAALQPPESLAVQNAVQFLKMI
GALDENENLTNLGRYLSMLPVDPKLGKMLIMGSVFRCIDPVLTVVSGLSVRDPFLLPQDK
KDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRK
QFNFILKDAGLLDAEPSISNSLSHNQALVRAIICAGLFPGIVSVVHREKSMSFKTMDDGQ
VMLYANSVNAKYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSVLILFGGTLTKGNLAGHL
KMLDGYIDFFMDPSLSECYLHLKEELDKLVQKKLEDPSLDIHKEGKFLMLALQELVAGDL
CEGRFVFGRETNRARLTSNDNNKSNIVKDGTNPKSLLQTLLMRASHSPPKYKTKHLKTNE
FRAIVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNSHRNEDDDSNLDITDNMLK
LLNQPRRRSKRQAGR
NT seq 3468 nt   +upstreamnt  +downstreamnt
atgcatcgtcgagggctatggttagggttaggatttcttgtgaggtccgggagattagcg
gcagcgccgttggattgcaggcctggagctttacattgcttgttgcgaagcttgttaccc
tcatctaatgatgttggagttccgtggtggattgggaggggaagagtttattgtgggtac
gcggtcgagcagttctctgatgacgaatacgagtacgaggaccagaagccatcttcttcg
gtggctaacattgatgaatggaggtggaaacttagcatgctcttgcgtagtacggatgaa
caagaaattatttcaagagataagagggatcggcgtgattacgagcaaatctctagcctt
gcaagaagaatgggactttacagtgagctttacgggaaggtggtggttggcagcaaagtt
cctctgccaaattacaggcccgatctcgacgataaacggccacaaagagaggtggtgatc
cctctaagtttgcaaaggagagttgaaggtctaatggaggaacaccttgacaggatgcta
ctgacagctgagagagccagtgataagctagaacatgcttctgccattgaagatattgat
gatatcaacccagatgagaaccaagattctttagtcgataggtcagttatggaaaagatt
cttcagagaaagagttggcgcatgcagaatttgcagcgaacatggcaggaatcccctgaa
ggtatcaagatgctaaacttcaggaaatcacttccagcatacaaggaaaaggagagactt
ttgtcagctattgcacggaatcaggtcatagtgatttctggggagactggatgtggcaaa
actactcaactccctcaatatgtactagaatctgagatcgagtctggtcgtggggcattc
tgtaacatcatctgtactcagccgcgaagaatatctgctatagctgttgcagaaagagtt
tctactgaaagaggagagaatcttggtgaatcggttggttacaaagttcgattagaggga
atgaaaggaaaaaatacgcatctgctgttctgtaccagtggtattttgttaagaagattg
cttggggaccgtaatctgaatggtataactcatgtttttgttgatgaaattcatgaaaga
ggcatgaacgaagatttcttattgattgtattgaaagatctccttccacgacgtcgggat
ttgagattaattttgatgagtgccactttgaatgctgaacttttctcaaattattttgga
ggggctcctacaattcacataccgggctttacatacccagtaagggcacactttctagaa
gaaattttggagaagactggatacaaattgagttcatctaaccaaatggatgactatggc
caagataaattttggaagacacagaggcagttaatgcctcgaaagagaaagaatcagatc
actgcacttgttgaggacagtcttaaaatctcaagcttcgagaactacacttccaggaca
cgtgattctttgtccagttggaacccagattgcatagggtttaatcttattgaggctgtt
ctatgtcacatttgtcgcaaagaacgctcaggtgctgttctagttttcatgactggctgg
gatgatattagctgcttaagagatcagctaaaagcacatcctctgttaggagatccaaat
agggttttactgcttgcttgtcatggttccatggctacttctgagcagaaactcatattt
gagagaccaccgcctaatgtacgtaaaattgtccttgctacaaacatggcagaagcaagt
attacaatcaatgatattgtttttgtggttgactgtgggaaagcaaaggagacctcatac
gatgctttaaacaatacaccttgtttgctcccatcctggatatccaaagcttctgcgcgt
cagagaagaggcagagctggtcgtgtgcaacctggagaatgctatcacctctatcctaga
tgtgtatatgatgcttttgcagactatcagcttccagagcttcttagaactcctctgaac
tccttatgtttgcaaataaaaagtttgcagcttggtaccataggggagtttctgtccgct
gctttgcagcctccagaaagcttggccgtccaaaatgctgttcaattcttgaagatgatt
ggagcattagatgaaaatgagaacctcacaaacctcgggcgatatctttcaatgcttcca
gttgatccaaagctaggaaagatgcttattatgggttctgttttccgttgcattgacccc
gtcctcaccgtggtgtctgggttaagtgttcgggacccttttctgttgccccaagacaag
aaagatttggcaggaacagcaaaatcaagattctctgcaaaagactacagtgatcatatg
gctcttgtccgtgcatatgaaggatggaaagatgcagagagagaaggatctgcttatgag
tactgctggagaaactttctttcagcccaaactcttcaggcgatccattctcttcgaaag
cagttcaacttcattctgaaagatgctggtttattagatgccgaacctagcataagtaat
agcttgagccataaccaggcattggttcgtgcaattatatgcgctggcctctttccaggc
atagtatctgttgtgcatcgagagaagtccatgtccttcaaaacaatggatgatgggcag
gttatgctttatgctaactctgtgaatgcaaaataccagactatcccctacccatggttg
gtctttggcgagaaggtcaaagtcaatactgtcttcatccgagattcaacaggtgtatct
gattctgttctgatcctatttggtggcacccttacgaaaggcaacttggcagggcatttg
aaaatgctggatggttacattgacttcttcatggatccaagtttgtcagaatgctatctg
cacctgaaggaggaacttgataagcttgtacaaaagaagcttgaagatcctagtctcgac
attcacaaggaaggcaagttcctaatgcttgcgttgcaggagctggttgctggtgattta
tgtgaaggaagatttgtatttggccgggaaacaaatagagctaggttgactagcaatgat
aataacaaaagtaatattgtgaaggatggaacaaacccgaaaagcttgttgcagaccttg
ttgatgagagcaagccacagccctccaaaatacaagacaaagcaccttaagaccaatgag
tttagagcaattgtggaattcaaagggatgcaatttgtcggaaaacccaagaagaacaag
cagctcgcagagagggatgctgccatagaggcattggcatggttgacacatacttctgat
aatagccaccggaatgaggacgatgactctaatcttgacataacagataacatgctaaag
ctacttaatcagccgagacggcggtcaaagcgccaggcaggtcgatga

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