KEGG T11061: 140777971

Typha angustifolia (narrow-leaf cattail): 140777971

Entry

140777971         CDS       T11061

Name

(RefSeq) DNA topoisomerase 3-alpha

K03165

DNA topoisomerase III [EC:5.6.2.1]

Organism

tang Typha angustifolia (narrow-leaf cattail)

Pathway

tang03440

Homologous recombination

tang03460

Fanconi anemia pathway

Brite

KEGG Orthology (KO) [BR:tang00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    140777971
   03460 Fanconi anemia pathway
    140777971
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tang03032]
    140777971
   03400 DNA repair and recombination proteins [BR:tang03400]
    140777971
Enzymes [BR:tang01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     140777971
DNA replication proteins [BR:tang03032]
Eukaryotic type
  DNA Topoisomerases
   140777971
DNA repair and recombination proteins [BR:tang03400]
Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     140777971
   FA (Fanconi anemia) pathway
     140777971

SSDB

Motif

Pfam:

Topoisom_bac Toprim Zn_ribbon_GRF Zn_ribbon_Top1 zf-CCHC Zn_ribbon_GRF_2 Toprim_4

Other DBs

NCBI-GeneID:

140777971

NCBI-ProteinID:

XP_072978539

LinkDB

Position

15:complement(join(632615..632846,632958..633072,633521..633694,633882..633965,634212..634283,634397..634475,634661..634699,634780..634876,634953..635005,635796..635925,636745..636779,637157..637261,637429..637518,637861..637935,638441..638569,638683..638862,639066..639149,639222..639338,639447..639519,639595..639716,639819..639941,640365..640437,640525..640703,641120..641413))

AA seq 917 aa
MSGRGRIRVLNVAEKPSVAKSVSEILSRGRGLRSRQGRSRYNRVFEFEYAIGSQPCLMLV
TSVTGHLMELDFEDRFRKWHSCDPVDLYHAPIRKHVPQDKLDIKRTLEEEARKCQWLVLW
LDCDREGENIAFEVVEVCTAVNHNLNIWRAHFSALIEREIHESVQNLARPNKLFADAVDA
RQEIDLRIGASFTRFQTMLLKDAFVLDFAGDERNLVLSYGPCQFPTLGFIVERFWEIQSH
EPEEFWTINCSHTSDEGTATFSWMRGHLFDYTCAVVIYELCVEEPTATVNNVKLQEKMKY
PPYPLSTVELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSVNTDLHGIVRE
QAGHPIWGSYAQRLLDPETRLWRNPSNGGHDDKAHPPIHPTKFSSGEPNWSQDHNKLYEL
VVRHFLACVSQPAVGAETTVEIDIAGEQFNASGRVIISKNYLDVYRFESWGGTLLPTYTV
GQQFIPTTMTLDSGVTRPPPLLSESDLLSRMDKSGIGTDATMHDHIKKLIDRCYATKDSN
TRFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSMGTKRKSEVLESCLHQMKSC
FVDARLNKIKLLEAMEIFFERSGRSNGDAHNFGEVVRSCGVCHESDMVLKRRPNGEFMVG
CLRFPLCRNVVWLPSSLSEAAVTGHVCPTCSPGPIYMIQFKFRRVEIPPNYEVDHLGCIG
GCDITLRELTEICGTGSRNHASTAARGQGAVEVPINTRHRSSRQETCTYCRQAGHSSDDC
PSQVMRSNSAQSSSVQRSRSVPGQILCDSCGAQCALRTANTETNRGRKFYKCQFQECGFF
IWEDDVENSGSRGRSESRGSSSRSSSTGRRGGRGRGQRGRNADGMTFVSATGERVSGCCF
TCGDTSHFANACPNRGR

NT seq 2754 nt +upstreamnt +downstreamnt
atgtcgggtcgcggtcggatccgagtcctaaacgtggcggagaagccgtcggtggccaag
tcggtgtcggagatactatcccgtggacgcggcctacgttcccgccagggtcgctcccgc
tacaaccgcgtgttcgagttcgagtacgccatcggatcccagccctgcctcatgctcgtc
acctccgtcaccggccacctcatggagctcgatttcgaagatcgcttccgcaagtggcat
tcgtgcgaccctgtcgacctctaccacgccccaatccgcaagcacgtccctcaggacaag
ttggatattaaacgaactttggaggaggaagctaggaaatgtcagtggttggtactttgg
cttgattgtgatagagaaggtgaaaacattgcatttgaagtggtagaggtttgcacagct
gtaaaccacaatctcaacatttggagagctcatttctcggctttaattgagagggaaata
catgaatcagtacagaatcttgccagacccaacaaattatttgctgatgctgttgatgcc
aggcaggaaattgacctccgtataggtgcctctttcactaggttccagactatgctgcta
aaagatgcatttgttctcgattttgcaggggatgagagaaatcttgtgttaagttatggt
ccttgtcagtttccaactcttggttttattgttgaacgtttttgggagatacaatctcat
gagcctgaagagttctggacaataaactgctcacacacttcagatgagggaactgctact
ttcagctggatgcgaggtcatttatttgattacacgtgcgctgtggtaatttatgagttg
tgtgtcgaagaaccaacagcaactgtcaacaatgtcaaactccaggagaaaatgaagtat
cccccatatccattgagcacagtcgagcttcaaaaacgggcttccagatacttcagaatg
agttctgagcacacaatgaaggtggcagaagaactctatcaagctggattcattagttat
cctcgcacagagacagacaacttctcagtgaacacagatctacatggcatcgtgcgagag
caagcgggacatccgatttggggttcatatgctcaaagacttttagatccagagacaagg
ctgtggagaaaccctagtaatggtggacatgatgacaaggcacatcctcccattcatcca
acgaagttctcttctggtgaacctaactggagccaagaccataataaattatatgagctt
gttgttcgccattttcttgcttgcgtctcacaacctgctgtaggagctgaaaccacagta
gaaatcgacattgctggtgaacagtttaatgcctctggccgtgtgataatttctaaaaat
tatttggatgtttatcgctttgaatcatggggtggtactttacttccaacatacacagtt
gggcaacagtttatcccaacgactatgacacttgattcaggagtgacgagaccacctcct
cttttaagtgaatctgatctccttagtcgtatggacaagtcaggaattggcactgatgca
acgatgcatgatcacatcaagaagttaattgatcgatgctatgcgaccaaagattcaaat
actcgtttctccccaacaaaccttggtgaggcgttagtaatgggttacgatgatatgggc
tatgagctctggaagccctacctcagatcaatgatggagtgtgacatgaaagcagttagc
atgggtaccaagaggaaatctgaagtattagagagttgcttgcatcagatgaaatcttgt
tttgtggatgcaagactgaacaaaataaaactccttgaggcaatggagatattctttgag
agatctggtagatctaatggagatgcacataactttggagaagttgtcaggtcttgtggt
gtctgccatgaatctgatatggttctgaagcgacggccgaatggtgaatttatggtcgga
tgtttgcgttttccactgtgtaggaatgttgtttggctcccaagctcattatcagaagca
gctgtgactggtcatgtttgtccaacatgtagtccaggtccaatttatatgattcaattt
aagtttcgtcgagtggagattccaccaaactatgaggttgatcatctcggttgtatcggc
ggctgtgacatcacattaagagaattaactgagatttgtggaacagggtctcgtaatcat
gcttccaccgcagcaagaggacagggagctgtggaggttccaattaataccagacacaga
agttcaagacaggaaacttgtacatattgccggcaagcagggcattcttcagatgattgc
ccttctcaagttatgcgttcaaacagtgctcagtcaagcagtgtccaaagatcaagaagt
gttccaggtcaaatattgtgcgactcatgtggtgcacaatgtgcattgcgaactgctaat
acagaaactaatagagggaggaagttctacaagtgccaattccaagaatgcggcttcttt
atatgggaagacgatgtggagaacagtgggtcacgaggtcgtagtgagtcccgtggaagc
agcagcaggtcatcatccactggaaggcgaggtggccgtgggcgaggccaaagaggaaga
aatgctgatggtatgacatttgtatcggcaactggtgaaagagtctctggttgctgtttt
acctgtggtgatacctcacactttgcaaatgcctgcccaaatcgtggcagataa

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