KEGG   Typha angustifolia (narrow-leaf cattail): 140778194
Entry
140778194         CDS       T11061                                 
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
  KO
K12856  pre-mRNA-processing factor 8
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140778194
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tang03041]
    140778194
Spliceosome [BR:tang03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    140778194
 Complex C
   U5 SnRNP specific factors
    140778194
SSDB
Motif
Pfam: PROCN PRP8_domainIV U6-snRNA_bdg PRO8NT U5_2-snRNA_bdg PROCT RRM_4 JAB
Other DBs
NCBI-GeneID: 140778194
NCBI-ProteinID: XP_072978887
LinkDB
Position
15:join(17501413..17501684,17502659..17502782,17502899..17502991,17503185..17503575,17503883..17504372,17504482..17505272,17505431..17505516,17505605..17505787,17505967..17506281,17506358..17506662,17506746..17507200,17507301..17507427,17508490..17508731,17508835..17508958,17509045..17509234,17509321..17509428,17509677..17509930,17510108..17510724,17510815..17510921,17511081..17511335,17511426..17512061,17512150..17512347,17512426..17512704,17512800..17513042,17513132..17513323)
AA seq 2358 aa
MWNGAAPPSSSMAPPPPGTTGTPAAPPPPPPAVQPSYSIPPSPAELEAHLVEKARKWQQL
NSKRYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVY
KLLENMPMPWEQVRNVKILYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRH
FKRMRFPPFDDEEPPLDYADNLLDVEPLEAIQLELDEEEDSAVYTWFYDHKPLVKTKLIN
GPSYRKWHLSLPIMATLYRLAGQLLSDLIDHNYFYLFDMESFFTAKALNMCIPGGPKFEP
LYRDMEKGDEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVKLCVYHSPMIMYIK
TEDPDLPAFYYDPLINPITSINKVDRREKKVNEEEDEEDFNLPDGVAPLLADIQLYTDTT
AAGVALLFAPRPFNMRSGRMRRSEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCYVLNE
LHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHL
DYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGL
QYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWL
FFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMP
EGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNR
ERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLE
SRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEAL
SRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPN
WVKPADSEPPPLLVYKWCQGINNLQGIWDTGDGQCVVMLQTKFEKFFEKIDLTMLNRLLR
LVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLMLDLLLLGLTRA
SEIAGPPQMPNEFITFSDTKVETRHPIRLYSRYIDKVHMLFRFTHEEARDLIQRYLTEHP
DPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVY
SKDNPNLLFSMCGFEVRILPKVRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRVDDEHM
KVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQT
RIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGM
SHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIP
RINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQA
LGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLW
WSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVL
DQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWPMSKPSLVAESKDVFDQKAS
NKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGN
WFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQII
WFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLA
KWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACL
KIEKFGDLILKATEPQMVLFNIYDDWLKTISSYTAFSRLILILRALHVNNEKAKMLLKPD
KTIVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEIT
PPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQQAFGSKTDWRVRA
ISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGLSPQDNP
QVKEIRCIAMPPQWGTHQQVHLPSALPEHEFLNDLEPLGWMHTQPNELPQLSPQDLTSHA
RILENSKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRLNKDTGSNPHGYLPTHYE
KVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTASMKYGMKLGTPRDYYHEDHRPTHYLEF
SNLEEGETAEGDREDKFT
NT seq 7077 nt   +upstreamnt  +downstreamnt
atgtggaacggcgcggcgccgccttcgtcctcgatggcgcctccgccaccggggaccact
gggactcctgcagcgccgcctccgcctccgcctgcggtgcagccgtcttacagcatacct
ccttctccggcggagttggaggcgcatctggtggagaaggcaaggaagtggcagcagctc
aactccaagaggtatggcgacaagcgcaagtttggattcgtggaggcgcaaaaggaggac
atgccaccggagcatgttcgcaagattatcagagatcatggagacatgtcttcaaagaaa
taccgtcatgataaacgtgtataccttggagcccttaagtttgtacctcatgcagtttat
aagcttcttgagaacatgcccatgccatgggagcaggttcgcaatgtgaaaattttgtat
catatcactggagcaatcacatttgtaaatgagattccttgggtagttgaaccaatctac
cttgcacagtggggtaccatgtggattatgatgcggagagagaagagggataggaggcat
ttcaaaagaatgcgttttcctccatttgacgatgaggagcctccattagattatgctgat
aatcttctggatgttgaaccattggaggctatacaactggaacttgatgaggaggaagat
tctgctgtgtacacctggttttatgatcacaaacctcttgtaaagacaaagcttataaac
ggacctagctacaggaaatggcatctttcacttccgataatggcgactctttatcgactc
gcagggcagctattatctgatttgattgaccataactatttttacttgtttgacatggag
tcattcttcactgccaaggccttgaacatgtgtatacctggtggtcccaagtttgagcca
ttgtaccgtgacatggagaaaggagatgaggactggaacgaatttaatgacatcaataag
ctcatcattcgtcagccactgaggacagagtacagaattgcttttcctcatctgtataat
aacagaccaaggaaagtaaagctttgtgtatatcattctccaatgataatgtacataaaa
actgaggacccagatttgcctgcattctattatgatcccttaataaaccccataacatca
attaacaaggttgaccggcgtgagaagaaagttaatgaagaggaagatgaggaagacttt
aacctcccagatggtgtggcacctctgttggctgatattcaactttatactgatacaaca
gcagctggagttgcattattgtttgctccacgtcctttcaacatgagatctggccggatg
cgacgatctgaagacatacctcttgtgtctgagtggtacaaagagcattgccctccatct
tatccagttaaagttcgtgtcagctatcagaaacttttgaagtgttatgtacttaatgag
ctgcatcacaggcctccaaaggcccaaaaaaagaaacatttgtttcggtcacttcaagca
actaagttctttcaaactacagaactagattgggcagaagcaggtctgcaagtttgtaag
cagggttacaacatgctgaatttgttgattcaccggaaaaatctcaactatcttcatctt
gattacaatttcaatttaaaacccgtaaagacactaaccacaaaggagcggaaaaaatct
cgttttggaaatgcatttcatctatgtcgtgagatattgcgactgaccaagctggttgtt
gatgcaaacatccagtttcgcttgggaaatgtggatgcattccaattggctgatggtttg
cagtatacattttcgcatgttggtcagttaaccggtatgtaccgttacaagtatcgacta
atgcgacagatacgaatgtgtaaggatctgaaacacttaatctattaccggttcaacact
ggccctgttggaaaagggccaggctgtggattttgggctccaatgtggcgggtctggtta
tttttccttcggggcattgtgcccttgctggagagatggttaggcaatcttcttgctcgg
cagtttgaggggcgtcattcaaaaggagttgccaagactgtcactaagcaacgtgtagag
agtcactttgatttggaactccgagctgcagttatgcatgatgttcttgacgcgatgcca
gagggcatcaagcaaaataaggcgaggaccatcttgcaacatcttagtgaagcatggcga
tgctggaaagccaacattccttggaaggttcctggtttgccagtccccattgaaaacatg
attcttcgatatgtcaagtctaaggcagattggtggaccaatgttgctcactataatcga
gagcgtattagaaggggtgcgacagtagacaagactgtttgtaggaagaatctaggaagg
ttgactcgtctgtggttgaaggcagaacaggagaggcaacacaattatttgaaagatggt
ccatatgtcactcctgaagaagcagttgctatatatactacaactgttcactggttagag
tcgaggaagttctcacccataccttttcctcctctatcatataaacatgatacaaagctt
ctcattctagcattggaaaggctaaaagagtcatacagtgttgcagttagattaaatcaa
ttgcagagggaagaattgggtctgattgagcaggcctatgacaatccacatgaggcattg
tcaaggataaaacgtcacttgcttacacagcgtgctttcaaagaagttggaatcgaattt
atggatttatacagctatttgattcctgtatatgaaattgaacctctcgagaaaatcaca
gatgcatatcttgatcaatacctttggtatgaaggtgacaagcgacatcttttcccaaat
tgggtcaagcctgcagattcagagccgccacctcttcttgtctataaatggtgccagggt
ataaataacttacagggcatatgggatactggtgatggacagtgtgtagtgatgctccag
actaagtttgagaaattctttgagaaaatagacctgaccatgttaaataggcttctacga
cttgtcctagatcacaatattgctgactatgtcactgccaagaataatgtggtgttgtcc
tacaaggatatgagccatacaaactcatatgggctaattcgtggtcttcagtttgcttcc
tttgttgttcagtactatggactcatgctagatctcttacttctgggcctaactcgagcc
agtgaaatagctgggccgcctcaaatgccaaatgaatttatcacattttcagatactaaa
gttgagaccaggcacccaattaggttgtattctcggtatattgacaaggtacatatgttg
ttccgtttcactcatgaagaggcacgcgacctcattcaacggtacctgacagaacatcct
gatccaaacaatgaaaatatggtgggttacaataataagaagtgttggccaagagatgca
agaatgagactcatgaagcatgacgttaaccttgggagaagtgtcttttgggatatgaaa
aatcgtcttccgagaagtattacaaccttggagtgggaaaatagtttcgtttctgtctac
agcaaggacaaccctaacctgctttttagcatgtgcgggtttgaagtgcgtatattgccc
aaagtacggatgactcaagaggcattcagcaacacgaaggatggagtctggaacttgcag
aatgagcaaaccaaagaaaggacagcaatagcctttttgcgtgttgacgacgaacacatg
aaggtgtttgaaaaccgtgtcaggcaaatccttatgtcatcaggatcaacaacatttact
aagattgtcaacaaatggaatacagcccttatcggtcttatgacatatttccgtgaggca
acagtgcatacccaggagctattagatttgctggtcaaatgcgaaaacaagattcaaact
cgtattaagattggattgaattcaaagatgcctagcaggtttcctcctgttattttctac
acaccaaaggagattgggggtcttggtatgttgtcaatgggccatatactgataccacag
agtgacctcaggtatagccagcagacagatgttggggtgacgcacttccgcagtggtatg
agccatgaggaggatcaactaatcccaaatctttatcgctatattcagccatgggagagt
gaattcattgattcacaacgtgtatgggctgaatatgcattaaagaggcaagaagcacaa
tcacaaaataggcggttaacgcttgaggatcttgaggattcctgggacagagggatacct
cgaatcaatactctcttccaaaaagaccgtcacacattggcatatgataaaggctggagg
gtacgcactgattttaagcagtaccaagtcctgaaacaaaatccattttggtggacgcat
caacgacatgatgggaagctgtggaacttgaataattatcgaactgatgtcatccaagca
cttggaggagtggaaggaatattggagcataccttatttaaagggacatatttcccaaca
tgggaaggtctcttctgggagaaggcatctggttttgaagagtcaatgaagtataagaag
ctaactaatgctcaaagatctgggttgaatcaaatccccaatcgtaggttcaccttgtgg
tggtccccgacaataaatcgtgcaaatgtgtatgtaggcttccaggtgcagctagatctt
acagggatattcatgcatggaaaaattccaaccttgaagatatctttaattcagatattt
cgagctcatctttggcaaaagatccatgagagtgttgttatggatctttgccaagtttta
gatcaagaactagatgcactggagattgagactgtgcagaaagagacaattcatcccaga
aagagttacaagatgaacagttcttgtgcagacgttcttctatttgctgcacatagatgg
ccaatgtccaaacctagcttagttgcagagtcaaaggatgtttttgatcaaaaagcaagc
aataaatattggatagatgtgcaacttcgttggggggactatgattcacatgatatagaa
cgttatacaagagctaaattcatggattatacaactgataacatgtccatttatccatct
ccaactggagtgatgattggacttgatctagcatataacttgcattctgcttttggcaat
tggtttcctggttcaaaaccacttcttgcccaagcaatgaacaaaatcatgaagtcaaat
ccagctttgtacgtcttgagagagagaataagaaaaggtctgcagctatattcatctgaa
cctacagaaccatacctctcatcccagaattacggagagatcttcagcaatcaaatcata
tggtttgttgatgacacaaatgtgtatcgtgttacaattcataagactttcgagggaaat
cttactacaaaacctataaatggtgctatttttatcttcaatccaagaacagggcaacta
tttttgaaggtcatccacacaagtgtttgggcagggcaaaagcgtcttggacagttggcc
aagtggaaaacggcagaggaagttgctgctcttgtgcgatctctgcctgttgaagagcaa
cctaagcaaattattgtgactcggaaagggatgttggaccctttggaggtccatttgctt
gactttcctaacattgttatcaagggtagtgagcttcagctgccattccaggcttgcttg
aaaattgagaagtttggtgatttgatactcaaggctacagaaccacagatggttcttttc
aatatttatgatgattggttgaaaaccatatcatcatacactgccttctctcgtctcata
ctgatcttacgtgcacttcacgtgaataatgagaaggcaaagatgttgctgaagcctgac
aagacgatcgtcactgagccacaccacatttggccatctctgacagatgatcagtggatg
aaggtggaggttgcattgagggatctcatactttctgattatgcaaagaagaataatgta
aacacatcagccctgacacaatccgaaattcgtgacattatacttggtgctgagataact
cccccctcacaacagaggcaacaaattgcagaaattgagaagcaggcaaaagaggcaagc
cagttaactgcggtcacaactaggactacaaatgtgcatggagatgagcttattgttacg
acaactagtccgtatgagcaacaagcatttgggtcaaaaactgattggcgtgtgagggcc
atttctgctacaaatctgtatcttcgagtcaatcatatttatgttaactcagacgacata
aaggagacgggttacacttacatcatgccgaaaaacatattgaagaaatttatctgcata
gcagatcttcgtactcaaatttctggatacttgtatggtttaagccctcaagataatccc
caggtgaaggaaatccggtgtatagccatgccgccacagtggggaactcatcagcaagtc
catctcccatcagctcttcctgaacatgagttcctgaatgacttggagccattgggttgg
atgcacacacaaccaaatgagcttccacagctatctccacaggatctgacatcccatgct
cgaattctagagaacagcaagcaatgggacggtgagaaatgcattatcttgacctgcagc
ttcactccaggatcctgttctttgactgcatataagctcacaccaagtggttatgaatgg
ggtcgcctcaacaaggacactggaagcaatccacatggatacctgccaacccattatgag
aaggttcaaatgcttctcagcgaccgcttcttgggattttacatggttccagataatggt
ccgtggaattacaacttcatgggagtaaagcatactgcgagcatgaagtatggaatgaag
ctcggcacaccccgggactattatcacgaggatcacaggcctacacattatctcgagttc
agtaatctcgaggagggtgagacagctgagggagacagagaggataagtttacttag

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