Typha angustifolia (narrow-leaf cattail): 140778489
Help
Entry
140778489 CDS
T11061
Name
(RefSeq) U-box domain-containing protein 12
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
140778489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tang04121
]
140778489
Enzymes [BR:
tang01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
140778489
Ubiquitin system [BR:
tang04121
]
Ubiquitin ligases (E3)
U-box type E3
140778489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
MLKL_N
zf-RING_UBOX
HEAT_2
ARMC9_ARM
Arm_2
zf-Nse
zf-C3HC4_4
Cnd1
ARM_LIN_C
KAP
Neurochondrin
zf-C3HC4_2
zf-C3HC4
Insc_C
GrpE
zf-RING_2
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
140778489
NCBI-ProteinID:
XP_072979331
LinkDB
All DBs
Position
15:complement(join(4780713..4781771,4781842..4782255,4783745..4783861,4784859..4785170))
Genome browser
AA seq
633 aa
AA seq
DB search
MSTTADEDEPVTSATAATAAAVDAVARMVGEISGLPESRGPLRRLCGDLARRVKLLAPLF
DELRDGGAASLGERETLAMEALREALVSAKELLRSIHDGSKLYQALRGEDFAEKFLEVNE
QIEKALNDLSYENFDIPEEVLEQVELVHAQFRRAKWKMDSPDTVFPKDLDRMLRGEPCDP
ATLRRISEKLQLRNMNDMTRESVALHEMVISSDGEPDDYLEKMSSLLKKLRDCVLNENPI
TDTTQNKISSIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDSGHKTCP
KTQLNLSHTALTPNFVLKSLIAQWCEANGIELPKNKVSRDKRSMKNSDCDRAGINMLMLK
LKSGNQDEQRASAGELRLLAKRNANNRVCIAEAGAIPLLVDLLSSADPRTQEHAVTALLN
LSIHENNKASIVDTNAIPKIVEVLKSGSMEARENAAATLFSLSVVDENKVTIGAAEAIPP
LIDLLCQGSPRGKKDAATAIFNLCIYQGNKVRAAKAGIVVHLMKLLADPSGGMIDEALAI
LAILASNQEGKAAIAQSESIPQLVEVMRTGSPRNKENAAAILWYLCTADEKQLKAAKDSG
AEEALKELAETGTDRAKRKANSLLEFMNQIEVA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgagtacgacggcggacgaggacgaaccggtgacgtccgccaccgccgccacagcagcc
gcggtggatgcggtggcgcggatggtgggggagatctctgggctgccggagagccgcggc
cctctgcggaggctttgcggcgacctggcgcggcgggtgaagctactcgcgccgctcttc
gacgagctcagggacggcggtgccgcctcgctcggcgagcgcgaaaccctagccatggag
gcgctacgtgaagctttggtctcggccaaggagctcctccgctcgatccacgatggtagt
aagctatatcaggcactacgtggagaagattttgctgagaaatttttagaggtaaatgaa
caaattgagaaggcattgaatgatttgtcgtatgagaactttgatattcctgaagaagtt
ctagagcaggtggaacttgtgcacgcccagtttcgaagagcaaaatggaaaatggactca
cctgatacagtatttcccaaggatttggatagaatgctgagaggagagccatgtgaccct
gcaaccctgagaaggatatctgagaaattgcaactaagaaacatgaacgacatgactaga
gaatcagtggctctgcatgaaatggtaatttcaagtgatggggagcccgatgactacctg
gagaaaatgtcgtccttgctgaagaagcttagagactgtgttctcaatgaaaatccaatt
actgacacaacacaaaacaaaataagctcgataaaacatagatctcccgttattccagat
gattttcggtgtcccatatctcttgagctgatgaaagaccctgtcattgtctctactgga
caaacatatgagagatcatgcatccagaaatggcttgatagtgggcacaagacctgtcct
aaaacacaactgaacctttctcatactgctctgacaccaaattttgtcttaaagagccta
atagcacaatggtgtgaagctaatggcattgaactgccaaagaataaggtaagccgagac
aaaagatcaatgaaaaattctgactgtgatcgtgctggtatcaacatgctaatgttaaaa
ctaaaaagtggaaaccaagatgagcaacgagcatctgcaggagagctccgactgcttgca
aaacgaaatgcaaataatagagtatgcatcgctgaagcaggtgctattcctttgcttgtg
gatctcctgtcatctgcagatccaagaactcaggagcatgcagtcacagcacttctaaat
ctctcaattcatgagaataacaaggctagcatcgtcgacactaatgcaataccaaagata
gtagaagtgctaaaaagtgggagtatggaagcaagagagaatgctgcggctacccttttc
agtttgtcagttgttgatgaaaataaagtgactataggtgctgctgaggcaatacctcca
cttattgatcttttatgtcaaggcagcccaagaggtaagaaagatgcagcaacagcaatc
tttaacctctgcatatatcagggtaacaaggtcagagcagcaaaagcagggatcgtggtc
cacttgatgaagcttttggcagatcctagtgggggaatgatagatgaagcgctcgccatt
ttggcaatccttgcaagcaaccaggaaggtaaggctgcaattgctcagtcagaatctatc
ccacagttggtggaggtgatgaggaccgggtccccgaggaacaaagagaacgcagctgca
attctatggtatctgtgtactgctgatgaaaagcagctgaaagcagcgaaggattcaggg
gcagaggaggcactgaaggaactagctgaaacaggcacagatcgtgccaagaggaaggct
aatagccttctagagttcatgaaccagatagaagtggcctga
DBGET
integrated database retrieval system
