KEGG   Typha angustifolia (narrow-leaf cattail): 140779431
Entry
140779431         CDS       T11061                                 
Name
(RefSeq) ubiquitin receptor RAD23d
  KO
K10839  UV excision repair protein RAD23
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03420  Nucleotide excision repair
tang04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    140779431
  09124 Replication and repair
   03420 Nucleotide excision repair
    140779431
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:tang03051]
    140779431
   03400 DNA repair and recombination proteins [BR:tang03400]
    140779431
Proteasome [BR:tang03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    140779431
DNA repair and recombination proteins [BR:tang03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      140779431
SSDB
Motif
Pfam: XPC-binding ubiquitin UBA Rad60-SLD UBA_7 UBA_3
Other DBs
NCBI-GeneID: 140779431
NCBI-ProteinID: XP_072980592
LinkDB
Position
15:join(21185351..21185416,21186364..21186525,21187418..21187468,21188835..21188867,21188947..21188994,21189099..21189208,21189302..21189371,21190763..21190879)
AA seq 218 aa
MKIIVKTLGGYNFDIEVKPQDKVAYVKKVIEATLEGNQYPADRQMLIHEGVTLKDDTTLD
DNKIAEYGVIVVMLSKVSEAVHSTGSTANSFSQGRLGFLRKSPQFRTLMVLLQSNPQIIK
PMLQELGKQNPHIFQLIQDNEAEFSCIIKEPPVLGKRIFLSEDQVPQITFTLEEQEAIRR
LEAMGFKRALVVEVFLAQNKNEDLAADYLLDHLQEFED
NT seq 657 nt   +upstreamnt  +downstreamnt
atgaagataatcgtgaagactctggggggatacaatttcgatatcgaagtgaagccccaa
gacaaggttgcttatgtgaaaaaggttatcgaggcaacattagagggcaaccaataccca
gctgatagacagatgctcatacatgaaggggtaactctcaaagatgataccacattggat
gataataaaattgctgaatatggtgtcatagttgtgatgttgagtaaggtttcagaagca
gttcattccactgggtccactgccaattctttttcccagggccgcctcggcttcttacgt
aaaagtccacagttccgaaccttgatggttctgttgcagtctaatcctcagataataaag
cctatgcttcaagagttaggaaaacaaaatccccacatttttcagctgatccaggataat
gaagcagaattttcctgtataatcaaagaacctcctgtgctaggaaagaggattttccta
agtgaggatcaagtgccacaaataacatttactctggaggagcaagaagccattcggcgg
cttgaagcaatgggcttcaaacgtgcccttgttgtggaggtgttccttgctcaaaacaag
aatgaggaccttgccgcagactatcttttagatcacctgcaggagttcgaagactag

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