Typha angustifolia (narrow-leaf cattail): 140779439
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Entry
140779439 CDS
T11061
Name
(RefSeq) uncharacterized protein isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
tang Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140779439
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
140779439
Surveillance factors
Other surveillance factors
140779439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
140779439
NCBI-ProteinID:
XP_072980604
LinkDB
All DBs
Position
3:join(707177..707255,707767..707829,709133..709203,709899..710774,711726..711825,712093..712995,713107..715212,715285..715357,716059..716216,716314..716636)
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AA seq
1583 aa
AA seq
DB search
MMVANKVDLSEDLIPSKPAEEARAAKDDTTVENGDGKGLPGILAETKDKLMPENNIPLSP
QWLYSRPNESKDMHRSNFLPHGTSSDCHQKDNLVLEGSLGMKDGRQIELDVENNHSWHEE
ERETSLLSRRDRRKEGDRENEYCKTEHRSDSVPVKEMTDSRNLSFEQWLDATNRIVGNES
RRDSKWSSRWGPEGKEKDTCIDRKIDADREDTADEKQYIPGSNRTASESDSRDKWRPRHR
QEVPSCGSSVYHSAPGYGLQGGRGEGANVGFAPGRGRSNVLETSVFKRSSRTHPIGAAYG
HEKSSLSAEIFCYPRAKLLDVYRKNQVLSSFDSTPEGFEEVPPITISSSIAPLAFTAPDA
DEEDILENMCKVNTNGSDICNNLCRNADRRVNSSAADRTSILGEYRGKTNAYNDEEDRGF
VTPSNSKNDAYYNIGDLANKHTDTKYKLEVGVPVVRNSDEIVDPSGAFAKNANENINSPN
SFNGIPNIPLDSSSLLDESFISEQPNRKEQDGTNNDEVKISEQSDEVKMSEQSVPPKELS
LFYLDPHGEIQGPFLGVDITSWFERGYFGTDLPVRLSSAPEGANFQQLGDVMPHLKDKVQ
AVYVPYVNDQSHMSVAAGGNLETSTIPTEISSSTSVNSQQLATTDFLDSLDRQGQRGTFE
HDDFRNSDDRWLHYPEFETSAGISTAQTQNFHELSQEGVPCPGMPVMSTENILSKSFDNL
HLAYTTIVGSPSLAGGMEEMKMTDQMVPADNELNPFGLLLSELEGTHLRHPLSSNICNTT
DQNMANLAVGGEASFSGQKHKSLNSALNFSGNDASLTNGRRNTSSNVLQNFMDASLFSRS
ELDSDHCRLKEHLLSQQLQSRQLRQHHLLFPQQTMHADRKLLDKAEGSIRHQQFIRRAIP
DIELQLHHQKQQQVQFHLQKMQLLQQYQHHQQQRLQQQLLVEQLRNRHVLDAGFGQSYMD
TCQPNSVLDQYLCRQKLLRELQDQSHYLSQQHGFSLEQLIQAGSRYHGERQNDHLDVLSH
PRNKHILPLEEQVLLDIQQQQLLAHQLSMKSKQMARIEEQRHSGRVWPVGESDQFSQTAF
HPPHSQGNGFDQLDFLEQHQRSLSLNQRSYLEQVSMMHGGLQQGNIEPNLQFFDRSISLS
TRNPESNNDLAHVIAHQGLNVQEESGHMYPSDKIMQFPSERQLYQHQNSYQFAPHLDAIR
GQQIAFSGQLPLVESRFNQLHLELQQQKRDMSKGFSLDNEEAWSSLARENENLMNGLDLL
HHKQVNQISQTLGMAKGASISSYGIREPARLLSDYELNHFSQSEKTLQQSLANIDVKEHA
NNIANRELDIQMSRGLSNEFEPLDMVKLEKYGHGDYIGGNISLSDLRDRKRNNLGEDSLM
DHRDLNDNKLIRPASFDSIGGSLGSYGYGLEDDIAYDKSMSNGSRISGILLEGMDESSLK
RAHVSHATSSQVSSLATVSAPYPIKGKGPVSLATSDGGQEHEGNAKVLETSARSKSNARF
HGDYSYGDRDPPEASFVDMLKKPAVTEAVVSTGTADSTDSSTVGKSGKKKGKKGRQIDPS
LLGFKVHSNRIMMGEIHRPGDFI
NT seq
4752 nt
NT seq
+upstream
nt +downstream
nt
atgatggtggcgaacaaggttgatctgtcggaggatctgatcccgtcgaagccggccgag
gaggcacgggcggcgaaagatgacacaaccgtggaaaatggtgatggcaaggggctccct
ggaattcttgcagaaactaaagataaattaatgccagagaacaatatacctttgtcgcct
cagtggctttactcaagacccaatgaaagcaaggatatgcatcgatcaaatttcttgccc
catggtacctcttctgattgccaccagaaagataatttggttttggaagggtctcttggt
atgaaggatggaagacaaattgaacttgatgttgaaaataaccacagttggcatgaagaa
gagagggaaaccagtctactcagcaggagggaccgaaggaaggaaggagatcgagaaaat
gaatactgtaaaaccgaacaccgttctgacagtgttcctgttaaagaaatgactgattct
aggaacttgtcatttgagcagtggcttgatgctactaaccgtattgtgggaaatgaaagt
cgacgggacagcaaatggtcatctagatggggcccagaagggaaagagaaagatacatgt
atagacagaaaaatagatgctgatagggaggatactgcagatgaaaaacaatatattcct
ggcagcaaccgtacggcatctgaatccgattcccgtgataaatggagaccacgtcatcgt
caagaagttccttcatgtgggtcatctgtttatcattctgctccgggttatggcttgcag
ggagggcgtggtgagggtgcaaatgttggctttgctcctggaaggggtagatcaaatgtc
cttgagacatctgtattcaagagatcttctcgcactcatcctattggtgctgcatatggg
catgagaagtcaagtttatctgctgaaatattttgctatccacgggcaaagcttcttgat
gtttataggaagaatcaggtgttatcatcatttgattcaactcctgagggttttgaggaa
gttcctcctataacaatatcaagttctatagctccgttggcttttaccgcacctgatgca
gatgaagaggatatactggagaatatgtgcaaagtcaacactaatggtagtgacatctgc
aataatttatgcagaaatgctgatagaagagtcaatagcagcgcagcagacagaacctcg
atcctcggagagtatcgaggaaagaccaatgcttataatgatgaggaagatagaggtttt
gtgactcccagtaattcaaagaatgatgcttattataatatcggagatctagccaataaa
catacagatacaaaatataaattggaggttggtgtgccagttgttagaaattctgatgaa
attgtggacccttctggtgcttttgcaaagaatgctaatgagaatatcaactcacctaat
tcttttaatggaattcctaatatacctcttgattctagttctctgcttgatgaatcattt
atctcggaacaacctaataggaaagagcaggacggaaccaataatgatgaagtaaagata
tctgaacagagtgatgaagtaaagatgtctgaacagagtgttcctcctaaggagttgagc
ttgttttacctggatcctcatggagagatccagggaccatttttaggagttgatatcacc
tcttggtttgaacgaggttattttggtacagatctacctgtacgtttgtctagtgctcca
gaaggtgcaaatttccagcaactgggtgatgtaatgccacatttgaaagataaagtccag
gcagtctatgtaccttatgtgaatgatcaatctcacatgtcagttgctgcaggagggaac
cttgagactagtactattcctactgagataagtagttcaacttctgtaaatagtcagcag
ttagcgacgactgacttcctggattctttggaccgtcaaggtcaacgaggtacttttgaa
catgatgacttcaggaactctgatgacaggtggttgcactatccagaatttgaaacttcg
gctggcatttctactgcccagacacaaaacttccatgagcttagccaagaaggggttccg
tgtcctggaatgcctgttatgagtactgaaaatattctaagtaagtcttttgacaacctc
catctggcatatactactattgttggtagcccttctttggcaggcggaatggaagaaatg
aaaatgaccgatcagatggttccagcagataatgaattaaatccttttggtttattgttg
tctgaacttgaaggaactcatttaagacatcctctgtcatcaaacatatgcaacactact
gatcagaacatggccaatctggctgtgggtggagaggcatctttctctggtcaaaagcat
aagtcactaaattcagctcttaacttctctggtaatgatgcatcactgactaatggcaga
agaaacactagctcaaatgtacttcagaattttatggatgctagcctcttttctcgtagt
gaactagattctgatcattgccgtctgaaagagcaccttctgtctcaacaattgcaaagc
cggcagcttcggcagcaccatttgttatttcctcaacaaaccatgcatgcagatagaaaa
ttgttagataaggctgagggttctattcgccatcaacagtttatcagacgagcaatacca
gatattgaactgcagctccatcatcagaagcagcagcaagtgcagttccatcttcagaag
atgcaactgttgcagcagtatcaacatcaccaacagcagcggctgcagcagcaattacta
gttgagcaattgaggaatcgacatgtgcttgatgctggttttggacaatcatatatggac
acctgccagccaaatagtgtgctggatcaatatctgtgtaggcagaaattactacgtgaa
ttgcaggaccaatctcattatctttcacagcagcatggtttttcattagagcagcttata
caagctggctctcgttatcatggtgagcgtcagaatgatcacttggatgttctctctcat
cctagaaataagcatattcttcctttagaagaacaagttctcttagatattcagcaacag
cagctactagctcatcagctctccatgaaatcaaaacagatggccaggatagaagaacaa
cgtcattcaggcagggtctggccagttggtgaatctgatcagttttcccagacagctttc
cacccacctcacagtcaaggcaatggatttgaccaattagattttctggagcaacatcag
cgatctttatctttgaaccaacggagttaccttgaacaagtctctatgatgcatggtgga
ctgcaacaaggaaatattgaacctaacttacaattttttgacaggtcaatctctttgtct
acacgtaatcctgagtcaaataatgatcttgctcatgttatagcacatcaagggctgaat
gtccaagaagagtctggtcatatgtatccttctgacaagattatgcaattcccttctgag
agacagctgtatcaacatcagaattcatatcagttcgctcctcatttggatgccataagg
ggccaacagatagctttcagtgggcagcttcctttagtagaatcacggttcaatcagtta
catctagagctgcagcagcagaagagagatatgagtaaaggtttctctttagacaatgaa
gaagcatggtcatcacttgcaagagaaaatgagaacttaatgaatggacttgatttgctc
catcacaaacaagtcaatcaaatttcccaaacactgggaatggccaaaggggcatctatc
tcatcatatggaatcagggaaccagctcggctcctttcagattatgagcttaatcatttc
tctcagtcagaaaagacattgcaacagagcttagcaaatatagatgtgaaagaacatgcc
aataacattgcaaacagagaattggatatccaaatgagtcgtggattatcaaatgaattt
gaaccactggatatggtaaagttggaaaaatatggtcatggggattatattggtggcaat
atatctctatcagatttgagagacaggaaaaggaacaacttgggagaagactcactgatg
gatcatagagatttaaatgacaacaagctaatcagacctgcttcatttgacagcattggt
ggaagtttgggttcttatggctacggactggaagatgatattgcttatgataagtcaatg
tccaatggcagcaggatatctggcatccttttggaaggaatggatgaatcctcactgaag
agagcacatgtctcacatgctacgtcatcccaagtgtcatccttggcgacagtttcagct
ccttaccccataaaagggaagggccctgttagcctggcaacctctgatggtggacaagag
catgaagggaatgcaaaagtcctggagacatcagccaggagcaagagcaatgcaaggttc
cacggggactattcctatggtgatagagacccaccagaagcttctttcgttgatatgctg
aagaaacctgctgtaacagaagctgttgtttctactggaactgcagactctactgattcc
agtacagttggtaaaagtggcaagaagaaagggaaaaaggggaggcagattgacccttct
cttctcggattcaaggttcatagcaaccgtattatgatgggtgagatccaccgccctggt
gattttatttga
DBGET
integrated database retrieval system
