KEGG   Typha angustifolia (narrow-leaf cattail): 140779529
Entry
140779529         CDS       T11061                                 
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
  KO
K12600  superkiller protein 3
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140779529
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140779529
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     140779529
SSDB
Motif
Pfam: TPR_2 TPR_1 TPR_17 TPR_11 TPR_16 TPR_14 TPR_8 TPR_CcmH_CycH TPR_6 TPR_7 BTAD TPR_MalT
Other DBs
NCBI-GeneID: 140779529
NCBI-ProteinID: XP_072980730
LinkDB
Position
15:join(23548104..23548106,23548202..23548279,23548359..23548589,23548669..23548791,23548912..23548995,23549065..23549115,23550179..23550271,23550585..23550725,23550809..23550889,23553041..23553288,23553366..23553537,23553622..23553737,23553840..23553897,23554656..23554721,23555267..23555485,23555609..23555660,23555923..23556296,23556360..23556454,23556857..23557096,23557191..23557834,23559012..23559215,23559298..23559482)
AA seq 1185 aa
MIDDVLFRQLQQTLDSDPNNSFHHFNLGLFLWKKGEEVEAEEESKRSREKAAEHFLASAK
LNPNDGAAFRFLGHYYGRVSTDAQRACKCYQRAVTLNPDDCEAGEGLCDLLDGEGKESLE
IAVCKEASSKSPRAFWAFRRLGYLQVHQRRWSESVQSLQHAIRGYPTCADLWEALGLAYQ
RLGMFTAAIKSYGRATELDSSKIFALIESGNIQLMLGSFRKGVEQFRCALEVAPQNLSAK
FGLSAGLLALARDCVNSGAFDWAATLLKEASEVAKVCTCLSGNLSSAWKLQGDIQITYAK
CFPWEDKMSSMEIDEEIFKSSINQWKDTCLLAAKSGKCSYGRALHLTPWQANIYADIAVS
LDLIDSLEGERTRDLGVWQLPERMCLGGLMLEGVNKEFWVILGCLSSSNSLKQHALIRGL
QLDVSLSEAWAYLGKIYRNLGEKQLARQAFDRARSIDPSLALAWAGMSVDYQDGISSKSE
AFESCLRAVQILPLAEFQVGLGTIAALTGHLHSPQVLGAIRQAVQRAPYSPESHNVNGLI
CEERLDFLSAITAYRKARCTLNIFCNLKADSQSHFADVSFNLARSLCKAGLATDALHECE
DLKREGLLESKGLQIYAVALWKIGQYDAALTIARNLAENVTTMDHKCATAALELISTLMY
SISGNNSAAATIQKFPSQFLLSARMRFIICALNALEPSKELQLLLRRMPQRDTSYDVATE
MHSIIALSKMMNHDCEQKLITGNGLGHLKRALHIYPDSSLIRNQLGSLLLSSGDWMAPHK
ATRCTQLPHGNPSWKGPRSPYEIHGAAVVACYASCSTIPNFSFTTCKDQHVHGKRGIYHL
QRWVHQEPWNRDASYLLILGVLQKAREEKFPEKICIILRRLIRNALSNEIFLQQTVLWQH
QKSNLLLCSSEISLQHGDYVGCISHASNALGVIPPDSDPLFAHLQLCRAYGMQENFSDLD
KEYMKCLRINATNEIGWIILKYIESRYRLEKGSNIIEKNLQTCIKQKGSSSSFWVALFNL
ACAQCFIWDLDYLSAEQAMTRACAEFDADTCLLLCHGAICMELARQQISPQFISRAAGSL
RKAQKNSANPLPIVSLLLAQAEASLGAKPKWEVNVRLEWFSWPPETRPAELYFQMHLLAS
HSSAASNQHPGPEKLQSPEKWILRAIHMDPSCLRYWRVLQKPIER
NT seq 3558 nt   +upstreamnt  +downstreamnt
atgatcgatgacgtcctcttcaggcagttgcagcagaccctagactcagatcccaacaat
tcttttcaccactttaatcttgggctcttcttgtggaagaagggcgaagaagtagaagcc
gaggaagagtcgaagcgatccagggagaaagcagccgagcacttcttggcctccgcgaag
ctgaacccgaacgatggcgctgcgttccggttcttggggcattactatggccgggtgtcc
actgatgcgcagagggcttgcaagtgctaccagagggctgtgacccttaatcccgatgat
tgcgaggctggtgagggcctgtgtgatttgttggatggagaaggaaaggaaagtttggag
attgctgtgtgcaaagaggcttctagcaagtccccaagagctttttgggcctttaggaga
ttagggtacttgcaggttcatcaaagaagatggtcagagtcagtacagagccttcaacat
gcgatacggggctatccaacatgcgccgatctatgggaagcacttggtcttgcataccag
cgattgggcatgtttactgcagctataaagtcatatgggcgagccactgaattggatagc
tcaaaaatatttgcattgatagagagtgggaatatccagctaatgcttggttcttttaga
aaaggagttgagcaatttcgttgtgccctggaagtagcaccgcaaaatttatctgcaaaa
tttgggctttccgctggccttcttgcattggctagggattgtgtaaattctggagctttt
gattgggctgccactctgttgaaggaagcatcagaagtagcaaaggtttgcacttgtttg
tcaggaaatctatcttctgcttggaagttgcagggggatatccagattacatatgccaaa
tgctttccatgggaagataaaatgagcagcatggaaattgatgaggaaatcttcaaatct
tccattaatcagtggaaagatacctgccttttggcggcaaaaagtggaaaatgctcatat
gggcgagctttacacctaacaccttggcaagctaatatctatgctgatattgctgtctct
ctggatcttatcgactctttggagggggaaagaacacgagatctgggtgtttggcagctg
cctgagaggatgtgtttgggtggattgatgctggagggagttaataaggagttctgggtc
atactaggctgtctgtctagcagcaattctttaaagcagcacgctttgattaggggattg
caattggatgtatctctttctgaagcatgggcttaccttgggaagatttacagaaactta
ggtgaaaagcaattggcaaggcaagcatttgatcgtgcaagaagcattgatccttcttta
gccttggcatgggctgggatgtccgttgactatcaggatgggattagttcaaaaagtgag
gcatttgaaagttgcctgagggctgtgcagatactgcctcttgcagaatttcaagttggt
cttggaacaattgcagctcttactggtcacctacattctcctcaggtactgggagccata
agacaggctgtccagcgagcaccctactctcctgagtcacataatgtgaatggtttgata
tgtgaagaacggctagattttttgtcagcgatcactgcttataggaaggcaagatgtact
ttgaacatcttttgcaatttaaaggcagattctcaatctcattttgctgatgtatccttt
aatcttgcccgatcactgtgtaaggcaggacttgctacggatgctctgcatgagtgtgaa
gatctgaagagagaaggtctgctcgagagtaaaggcctccaaatatatgctgttgcattg
tggaaaattggacagtatgatgctgctctgaccatagcaagaaatttggctgagaatgtg
actaccatggatcacaagtgtgcaactgctgctttagagttaattagcacattaatgtac
agcatttctggaaacaattctgcagcggcaacaatccagaagttccccagtcagtttcta
ttaagtgcaagaatgagatttattatctgtgcattaaatgctttggaaccaagtaaggag
ctgcagttgcttctgcggagaatgcctcaaagagatacgtcttatgatgtggccactgaa
atgcattcgattattgctctcagcaaaatgatgaaccatgactgtgaacaaaagttgata
actggcaatggactaggccacctgaaaagagctcttcatatatatcctgacagcagtctg
ataaggaaccaactaggttcattgttgctatcaagtggagattggatggctccacataaa
gcaactagatgcactcaattgcctcatggaaacccatcctggaaaggtccaagatcacct
tatgagattcatggtgctgcagtagtagcttgctatgctagctgttctaccattccaaac
ttttcctttacaacctgcaaagatcagcatgtgcatggaaaaaggggaatatatcatttg
cagagatgggtgcatcaggagccatggaatcgggatgcaagttatctgcttatacttggt
gttcttcagaaagcccgcgaagaaaaatttcctgaaaaaatttgtattattttgagaagg
ctgatacgaaatgctctgtcaaatgaaatatttttgcaacaaactgtgctatggcagcat
caaaagtccaatctgcttctctgttcttcagagatcagcttgcagcacggtgactatgtt
ggttgtatcagccatgcaagtaatgcattgggagttatccctcctgacagcgatcctctc
tttgcgcacttgcagttgtgccgtgcttatggaatgcaggagaatttttcagaccttgat
aaggagtatatgaagtgcttgcgcatcaatgcaactaatgaaatcggttggataatactt
aaatatattgaatccagataccgactggagaagggttcaaacataatagagaaaaacctt
caaacatgcatcaaacagaaaggaagttcctcaagtttttgggttgctctctttaattta
gcgtgcgctcagtgtttcatatgggacctggactatctgagtgcagaacaagctatgaca
cgtgcttgtgcagaatttgatgcagatacctgccttttactctgtcatggtgcaatttgt
atggaacttgctcggcagcagatatctcctcagttcatatctcgtgcagcaggcagcctt
agaaaggctcaaaagaattcagcaaatcctttacctattgtttcattgctgttagctcag
gcagaggcaagcctaggagcaaaacctaagtgggaggtgaacgttcggttagaatggttc
tcatggccgccagaaacgaggcctgcggaattgtatttccaaatgcacttgctagcaagt
cattctagtgcagcttccaaccaacatcctggcccagaaaaattgcagagtccagagaaa
tggattcttcgagcaatacatatggatccgtcatgcttaaggtactggagggttttacag
aagcctatagagcgatga

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