Candidatus Thiothrix anitrata: J8380_01220
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Entry
J8380_01220 CDS
T07878
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
tani
Candidatus Thiothrix anitrata
Brite
KEGG Orthology (KO) [BR:
tani00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tani03021
]
J8380_01220 (rpoH)
Transcription machinery [BR:
tani03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J8380_01220 (rpoH)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
UCR_14kD
YdaS_toxin
GntR
IF2_N
Motif
Other DBs
NCBI-ProteinID:
QTR50235
LinkDB
All DBs
Position
complement(236738..237607)
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AA seq
289 aa
AA seq
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MTNALMLRGQTLPVPVGNLESYIHAIHAIPVLDVEQERSLAERLKYHDDLEAARQLILHN
LRFVVKVARGYNGYGLPLSDLVQEGNVGLMKAVKRFDPEMNVRLISFAVHWIRAEIHEFI
LRNWKIVKIATTKAQRKLFFNLRSGKQRLGWLNHEEAQSMASDLGVTTAEVLEMEKRLSA
SDVSFDVSAEHDDEDAASYAPSQYLAAESADPAERLEAEEWDDFTRERLQSALKSLDARS
QDILASRWLVEEKATLHELAAKYNVSAERIRQLENAAVGKLRLAVLEAD
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgactaacgcattgatgctcagaggacaaaccttacccgttccggtaggtaatctggaa
agttacatccatgcgattcacgccattcccgtgctggatgtcgaacaggaacgcagccta
gcggaacgtctcaaataccatgatgatttggaagctgcgcgtcagttgattttacacaat
ttacgttttgtggtgaaagtggcgcgtggctacaacggttacggcttgcccttaagtgat
ttggtgcaagagggtaatgtcggcttgatgaaagcggtgaagcgttttgacccggaaatg
aatgtgcgtttgatttcatttgctgtgcactggattcgcgctgaaattcacgagtttatt
ctgcgtaactggaaaattgtcaaaattgctacgactaaggcgcaacgtaagttgttcttt
aatttgcgcagtggcaagcaacgtttgggctggttaaatcacgaagaagcgcagtcaatg
gctagcgacttaggggtgacaaccgccgaagtgctggaaatggaaaaacgtttgagtgcc
agtgatgtgtcgtttgatgtgagtgctgagcatgatgatgaagatgcggcaagctatgca
cccagccagtatttggcggcggaatcggctgatccagcggaacgtttggaagcggaagaa
tgggatgattttacccgtgaacgtttgcaatctgccctaaaaagtttggatgcccgcagt
caagatattttggcgagtcgttggttggtcgaagagaaagcaaccttgcatgagttggca
gcgaagtataacgtttctgccgagcggattcgtcaattggagaatgcggctgttggtaag
ttaaggttggcagtactagaagcagattga
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