Candidatus Thiothrix anitrata: J8380_03960
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Entry
J8380_03960 CDS
T07878
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tani
Candidatus Thiothrix anitrata
Brite
KEGG Orthology (KO) [BR:
tani00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tani03016
]
J8380_03960
Enzymes [BR:
tani01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J8380_03960
Transfer RNA biogenesis [BR:
tani03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J8380_03960
Prokaryotic type
tRNA splicing ligases
J8380_03960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QTR50734
UniProt:
A0ABX7X4F0
LinkDB
All DBs
Position
complement(767599..768828)
Genome browser
AA seq
409 aa
AA seq
DB search
MATTGNYEVLHEEGHVPVKSWTKGVPFDDNSKKQLLNIAQMPFIHQWVAAMPDVHLGKGA
TIGSVIPTVGAIIPAAVGVDLGCGMMAAKTTLKASDLPDSLEAMRSKIEKVVPHGRVATR
GKRDTGSWGEPPTDVLDKWLALSAGFQRLCEKHPFLKNTNNLNHLGTLGTGNHFIEVCLD
ETQTVWVMLHSGSRGVGNAIGTHFIEQAKKDMERYFIHLPDKDLAYIPEGSPHFRDYVEA
VAWAQDFAQANREVMMARTLQAIREVLPIPFTADVEAVNCHHNYISREHHYGKDVWVTRK
GAVSAQKGQLGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTEAKRRVSLDEHKR
AVAGVECRVDEAVIDETPSAYKPIDKVMAAQSDLVEIMHTLKQVLCVKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggccaccactggcaactacgaagtcctgcatgaagaaggtcacgtgcctgttaaatct
tggacaaaaggcgtgcctttcgacgacaactccaaaaagcaattgctgaacattgcgcag
atgccgtttattcaccaatgggtggcggcgatgccggatgtgcatctggggaaaggtgca
accattggcagcgtgattccgaccgtgggggcgattattccggcggcggtgggcgtggat
ttgggttgcgggatgatggcggcgaaaaccactttgaaggcgagcgatttacccgattcg
ttggaggcgatgcgtagcaagattgagaaagttgttccgcatgggcgcgtggcgactcgc
ggtaagcgcgataccggaagctggggtgagccaccaacggacgtgctggataaatggttg
gcgttgagcgcgggtttccaacgtttgtgcgagaagcatccgttcctgaaaaacaccaac
aatcttaaccacttgggtacgttgggtacgggtaaccatttcatcgaggtgtgtttggat
gaaacccaaaccgtgtgggtgatgttgcacagcggttcacgcggggtcggcaatgccatc
ggtacgcactttatcgagcaggcgaaaaaggatatggaacgctatttcatccacctgccg
gataaggatttggcgtacatccctgaaggtagcccgcatttccgcgactacgtggaggcg
gtggcctgggcgcaggatttcgcgcaagccaaccgcgaggtgatgatggcgcggacttta
caggcgattcgcgaggtgttgccgatcccgttcacagcggacgtggaggcggtgaattgt
caccacaactacatcagccgcgaacaccattatggcaaggatgtgtgggtgacgcgcaaa
ggcgcggtgagtgcgcaaaaaggtcagcttgggattattccgggcagtatgggggcgaaa
tcgttcatcgtgcgcgggctgggtaacgaggaaagcttttgcagttgcagccacggcgcg
gggcgcgtgatgtcgcggactgaggcgaaacgccgcgtgtcgctggatgagcataaacgc
gctgtggcgggagtggaatgccgcgtggatgaggcagtgattgacgaaacgccgtcggct
tacaagccgattgataaggtaatggcggcgcagagcgatttggttgagattatgcatacg
ctgaaacaagtgttgtgtgtgaaggggtga
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