Candidatus Thiothrix anitrata: J8380_07420
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Entry
J8380_07420 CDS
T07878
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tani
Candidatus Thiothrix anitrata
Pathway
tani03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tani00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J8380_07420 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tani03021
]
J8380_07420 (rpoB)
03400 DNA repair and recombination proteins [BR:
tani03400
]
J8380_07420 (rpoB)
Enzymes [BR:
tani01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J8380_07420 (rpoB)
Transcription machinery [BR:
tani03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J8380_07420 (rpoB)
DNA repair and recombination proteins [BR:
tani03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J8380_07420 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QTR51366
UniProt:
A0ABX7X659
LinkDB
All DBs
Position
1444820..1448902
Genome browser
AA seq
1360 aa
AA seq
DB search
MGLSYTEKKRIRKDFGKRPQILEVPDLLTIQLESYRQFLQLDKLVDDRRSVGLHAAFSSV
FPIVSYNNYVALEYADYRLAEPVFDVQECQLRGLTFATSLRVKLRLVIYDKDAPADAKVI
KSIKEQDVYLGELPLMTDKGTFIINGTERVIVSQLHRSPGVFFEHDKGKSNSAGKLLHSA
RVIPYRGSWLDFEFDPKDSIFVRIDRRRKLPSTILLRALGMQNEDILDYFFDKIAIHLSD
SAIEMELVPERLRGELASFDIMLDGTMLVETGRRITAKHIRQLEKSSLNKLVVPQDYMNG
KILAHNIIDSSTGELLAKANDEVTDVLLEKLRDNSVKNFSILYTNELDRGPFISNTLNID
SSNSALEAQIEIYRMMRPGEPPTKESAENLFNNLFFTDDRYDLSAVGRMKFNRRLGREEA
TGAGVLNQDDILAVLKKLIDIRDGRDDVDDIDHLGNRRVRSVGEMAENAFRVGLVRVERA
VKERLTMAESEGLMPQELVNSKPVSAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRISALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNDYGFLETPYRKV
IDGKPTMQIDYLSAIEESNYVIAQASAELDESGSLSDEFVSCRHRNEFTLMQADKVQYMD
VSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRADKPLSGTGMERAVAQDSGS
AVTARRGGVIDSVDASRVVVRVNDDEANEQGGVDIYSLIKYTRSNQNTCINQRPIVRVGD
LVARGDVLADGSSTDLGELALGQNMFIAFMPWNGYNYEDSILLSERVVDEDRYTSIHIEE
MACLARDTKLGPEEITADIPNVSESLLAKLDACGIIHVGAEVKPNDILVGKVTPKGESQL
TPEEKLLRAIFGEKASDVKDTSLRVPSGMAGTVIDVRVFTRDGVERDARALAIQEEDLKK
VRKDLRDELRIYEADIFDRFAKLVVGKEAVGGPNRLTAGAVVTQMYLDSLEHKDWFAIRM
QDEDINVQLEALSQQVDEKKKYYETRLQKQRDKLMAGDDLAPGVLKMVKVYIAVKRRMQP
GDKMAGRHGNKGVVSRIVPVEDMPYLENGQTVDIVLNPLGVPSRMNVGQVLETHLGWAAK
GLGEKIGRMIDAKARIDELRQFISEVYATGGNPNQDQIIDDLTDDEVIALAANLRKGVPM
ATQVFDGADEAEIKAMLRLADLPESGQTLLHDGRTGDAFERKVTVGYMHMLKLNHLVDDK
MHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRN
KMYKNIVDGDHYMEASMPESFNVLMKEIRSLGLNIELERD
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgggactgagttataccgaaaaaaaacgaatccgcaaagattttgggaagcgaccacag
attctggaagtgcccgacctgctcacgattcagttggagtcctatcggcaatttttgcag
ttggacaagctggttgacgatcgtcgcagtgttggtcttcatgcggctttttcttccgtt
tttccaatcgtcagttacaacaactatgttgcgttagagtatgctgattaccgtttggca
gagcctgtattcgatgtgcaggagtgccaattgcgtggcttgacgtttgctacgtcgctg
cgggtgaagttacgtttggtcatttacgataaagatgcccctgcggatgccaaagtcatt
aaatctatcaaggaacaagatgtttaccttggtgaattgccgttgatgacagataaaggc
accttcattattaacgggactgagcgcgttattgtttcccagttgcatcgctcacctggt
gtgttctttgagcacgacaaaggcaaatctaactcggccggtaagctgctgcacagtgcg
cgggttattccttaccgtggttcgtggttagactttgaatttgaccctaaagattccatt
tttgtgcgtatcgaccgtcgtcgcaaattgccttcgaccattttgctgcgtgcgttagga
atgcagaatgaagatattcttgattacttctttgataaaattgctattcatctgagtgat
agtgctattgagatggaacttgttcctgagcgtttacgtggtgaattggcatcgttcgat
attatgcttgatggcacgatgctagttgaaacaggtcgccggattactgcgaaacatatt
cgtcagttggagaagtctagcttgaataagttggtcgtgccgcaagactatatgaacggc
aagattttagcgcataatattatcgactcctccacaggtgaattgttggcgaaggccaat
gatgaagtgactgatgttttgttggaaaagttgcgtgataacagcgtgaaaaactttagt
atactgtataccaacgagttggatcgcggcccgttcatatccaatacattgaacatcgat
agctcaaacagtgccttggaagcgcaaattgaaatttaccggatgatgcgtccgggcgaa
ccgccaactaaagaatccgctgaaaacttgtttaataacttgttcttcaccgatgatcgt
tacgatttgtcagcggtcggtcgaatgaaattcaaccgtcgtttaggacgtgaagaggcg
actggtgcgggtgtattgaatcaggatgatattttagcggtgctaaaaaagctgatcgac
atccgtgatggtcgtgatgatgtggatgatattgaccacctcggcaaccgccgcgtgcgt
agtgtcggcgagatggcggaaaatgccttccgtgtcggcttggtgcgtgttgagcgtgca
gtcaaagaacgtctaacaatggcggaaagcgaaggtttaatgccgcaagagttggtgaat
tccaagccggtgtcagcggcaatcaaagaattctttggttccagccagttgtcccagttt
atggatcaaaacaatccgctgtcagaagtaactcataagcgtcgtatttctgctttgggg
cctggtggtttgacacgtgaacgtgcaggctttgaggtgcgtgacgtacatccaacccac
tacggtcgagtttgcccgattgaaacaccggaaggcccgaacatcggcttgatcaattca
ttggcggtgtatgcgcgtactaatgactatggttttttggaaacgccttatcgtaaagtt
attgatggtaagccgaccatgcagattgattatctgtcggcgattgaagagtccaattac
gtaatcgcacaggcgagtgcggagttggatgaaagtggctccttgtcagatgagtttgtc
tcttgccgtcatcgtaatgagtttaccctgatgcaggcggataaagttcagtacatggac
gtttcgccaaaacagattgtgtctgttgccgcttcgttgatcccattcttggagcacgat
gacgcgaaccgtgcgttgatgggttccaacatgcaacgtcaggctgtgccgtgtttgcgt
gcagataagccgttatctggtaccgggatggagcgtgctgttgcgcaggattccggttcg
gcagttacggcacgtcgtggtggggtgattgactctgtggatgcaagccgtgtggtagtg
agggttaatgatgacgaagccaatgaacagggcggggtcgacatttacagcctgatcaaa
tacacccgttctaaccaaaatacctgcattaaccagcgtccgattgtgcgcgtgggtgat
ctggtagcgcgtggcgatgtgctggctgatggttcttccactgacttgggtgagctggcg
ttagggcagaatatgttcatcgcgttcatgccctggaatggctacaactacgaagactcg
attttgctgtctgagcgcgtggttgatgaagaccgttatacatcgattcacattgaggaa
atggcgtgtttggcacgtgataccaaattggggccggaagaaattaccgcagatattcct
aacgtgagcgaaagtttgctggcgaagttggatgcttgcgggattatccatgtcggtgcg
gaggtgaagccaaacgatattctggtaggtaaggtcacccctaagggtgagagtcaattg
acaccggaagaaaagttgttgcgtgcgattttcggtgagaaagcgtctgacgtaaaagat
acttctttgcgtgtaccgagcggtatggcgggtacagttatcgacgtgcgtgtatttacc
cgtgacggcgttgagcgtgatgcgcgtgctttggcaattcaggaagaagatttgaagaaa
gtccgtaaggacttgcgtgatgagttgcgtatttacgaggcggatattttcgatcgtttt
gcgaagttggtggtgggtaaagaggctgtaggtgggccaaatcgtttaacagcaggtgct
gtcgttacacagatgtatctggatagtctggagcataaggattggttcgcgatccgtatg
caggatgaagacatcaatgtgcagttggaggcattaagtcagcaggttgacgagaagaaa
aaatattacgaaacgcgtttgcagaagcaacgggataagctgatggctggtgatgatttg
gcgcctggcgtgttgaagatggtcaaggtttatatcgcggtcaagcgtcgaatgcagccg
ggtgacaaaatggcggggcgtcacggtaacaagggtgtggtttcacgcattgttccggta
gaagacatgccatatctggaaaatgggcaaactgttgacatcgtattgaatccgctaggg
gttccttcgcggatgaacgttggtcaggttttggaaactcacttgggttgggcggctaaa
ggcttgggtgagaaaattggacgcatgattgatgcgaaagcgcggattgacgagttgcgc
caatttatcagtgaagtttatgccactggtggcaatcctaaccaagatcagattattgat
gatttgactgatgatgaagtcattgcgctggcagccaatttacgtaaaggtgtgccaatg
gcaacccaagtgttcgatggtgctgatgaggctgaaattaaagcgatgttgcgcttggca
gatttgccggaaagcggtcaaaccttgctgcatgacgggcgtactggcgatgcatttgag
cgtaaagtaaccgttggttatatgcatatgctcaagctcaatcacttggttgatgacaaa
atgcacgcacgttcaaccgggccatacagtctcgttacgcaacagccattgggcggtaaa
gcacaattcggtggtcagcgtttcggggagatggaagtctgggcattggaagcttacggt
gcggcttataccttgcaagaaatgcttacggttaagtcggatgacgtgaacggacgtaac
aagatgtacaaaaacatcgttgacggcgatcactacatggaggccagtatgcctgagtcc
ttcaacgtgttgatgaaggaaatccgctcgctgggtctgaatatcgaactggaacgggat
taa
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