Candidatus Thiothrix anitrata: J8380_12485
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Entry
J8380_12485 CDS
T07878
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tani
Candidatus Thiothrix anitrata
Brite
KEGG Orthology (KO) [BR:
tani00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tani03009
]
J8380_12485 (rlmD)
Enzymes [BR:
tani01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
J8380_12485 (rlmD)
Ribosome biogenesis [BR:
tani03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
J8380_12485 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
TRAM
RrnaAD
Methyltransf_31
MTS
TRM5-TYW2_MTfase
Methyltransf_11
Cons_hypoth95
Methyltr_RsmB-F
Methyltransf_23
Methyltransf_15
PCMT
Methyltransf_4
Methyltransf_12
N6_N4_Mtase
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
QTR49086
LinkDB
All DBs
Position
2444044..2445381
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AA seq
445 aa
AA seq
DB search
MSRSRKPRGVKNSPLVETTIESLTLDGQGVAHIDGKTVFIDGALPGETVAFRYTSYKAKH
DEGKVETVLTPSPERVEPRCEHFGVCGACSWQHISLEGQIRHKQQAMLNNLKYIGKVEPE
TVLEPLTAEGWAYRRKARLGARWVRKKEKALVGFREKEGGFLAELNRCEILHPSIGEHLT
DFQALVGGMEARETIPQIEVAVGDNATALVVRHMEPLSDTDTQKLIDFAREWDYQLYLQP
KGPETVHCIYPENSTLYYEHPQFNTKVGFVPLDFFQVNQPLNRKMVARALELLAPEPTDT
VLDLFCGLGNFTLPLARHAAQVIGVEGDMAMVERARAAAHANDIHNTDYYACNLMGEDLH
REPWLKKHRYDKILLDPPRAGAKEIIEHIGKLKAGRIVYISCDPATLARDAGELVNTHGY
RLVSAGVMDMFPHTSHVESIAVFEK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagcagaaaaccccgtggcgtaaaaaacagcccacttgtcgaaaccactatc
gaatccctcacgcttgacggtcagggtgtcgcccacattgacggcaaaaccgtattcatt
gacggtgcgttgccgggtgaaaccgtcgcttttcgctacacctcttataaagccaaacac
gacgaaggcaaggtcgaaaccgtccttacgccatcaccagaacgggtagagccgcgttgc
gaacacttcggcgtatgcggcgcgtgtagctggcaacacatttcgctggaagggcaaatt
cgccacaaacagcaagccatgctcaataatcttaaatacatcggcaaagtcgaacctgaa
acagtgcttgaacccttgaccgctgaaggttgggcataccgtcgtaaagcccgtttgggg
gcgcgttgggtacgcaagaaagaaaaggctttggtgggtttccgcgaaaaagaaggtggt
ttcctcgcagaactcaaccgttgcgaaattttacaccctagcatcggcgagcatctcact
gattttcaagcgttagtggggggcatggaggcgcgtgaaaccattccgcaaatcgaagtg
gcagtgggtgataatgccactgcgctggtggtgcgtcacatggaacccttgtctgacaca
gacacgcaaaaattaatcgactttgcccgcgagtgggattatcagctttatttgcagcct
aaaggccctgaaacggttcactgcatttatcctgaaaactcgacgttgtattacgaacat
ccgcagttcaataccaaagtaggttttgtcccgctcgactttttccaagttaatcaaccg
ctcaaccgtaaaatggtagcgcgtgccttggaattgcttgcacctgaacccaccgatacg
gtattggatttattctgtggcttgggcaattttactttgccattggcgcgtcatgccgcg
caagtgattggtgtggaaggcgatatggcgatggtggaacgcgctcgtgcggcggcgcac
gccaacgacattcacaataccgattactacgcttgtaacctgatgggcgaggatttacac
cgcgaaccctggctgaaaaaacaccgttacgacaagattttacttgatccaccgcgtgca
ggtgctaaagaaatcattgagcatatcggcaagctcaaagcgggacgcattgtgtatatt
tcctgcgatccggcaacgttagcgcgtgacgcgggtgaattggtgaatacgcatggctac
cgcttagtgagtgcaggggtgatggatatgttcccgcatacgtcgcacgttgaatccatt
gcggtgtttgagaaatag
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