Candidatus Thiothrix anitrata: J8380_15615
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Entry
J8380_15615 CDS
T07878
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tani
Candidatus Thiothrix anitrata
Pathway
tani03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tani00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J8380_15615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tani03019
]
J8380_15615
03009 Ribosome biogenesis [BR:
tani03009
]
J8380_15615
Enzymes [BR:
tani01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J8380_15615
Messenger RNA biogenesis [BR:
tani03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J8380_15615
Ribosome biogenesis [BR:
tani03009
]
Prokaryotic type
rRNA helicases
J8380_15615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
UvrA_inter
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QTR49642
LinkDB
All DBs
Position
complement(3131299..3133257)
Genome browser
AA seq
652 aa
AA seq
DB search
MSPEINTSPIFADFGLAAPVLQAVQDLGYETPSAIQAETIPYLLEGRDVLGQAQTGTGKT
AAFALPLLSRLDMSKTGPQILVLAPTRELAIQVAEAFQKYAGKLPGFHVMPIYGGQDYRT
QFRQLERGVQVVVGTPGRVMDHLRRGSLKLDGLQALVLDEADEMLRMGFIEDIEWIMEQT
PPTRQIALFSATMPPAIHRIAQSYLTNPAEVKIKVKTTTADTIRQRYWLVSGLHKLDALT
RILEAEPFDAVIIFVRTKTETVELADRLQARGYSAVALNGDIPQNVRERTIDQLKKGKID
ILIATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGDAILFVSPRERHLL
RAIERATRKPIDLMELPSTEIINNRRISLFNQRITDTLAEEGLDFFSQLLEAYEREHNVP
AIEIAAALAKLVQGDAPLLLEEKKNHPAYNPDSAREREQDQRKPGKRKANSAFSSDEETI
PMERFRIAVGRTHGVKPGNIVGAIANEAGLDSRYIGHIDIQDDFSLVDLPAGMPKDILGD
LRRTRVAGQMLNIEPAGESAADYSPSRTSGGGGGGGRRPERDGGGRGRSFGGGSGSAPPR
RREAGKTGERPDRRPRAEKSAGGERPPSRPKPSTISRKPASDKDKGKPKRND
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtccccagaaataaatacttcccccattttcgccgatttcggcctcgccgcccctgtc
ctgcaagcagttcaagacctcggctatgaaacaccttcagctattcaggctgaaaccatt
ccttatttgctggaggggcgcgacgtattaggtcaagcgcaaaccggcaccggcaaaact
gccgctttcgccctgccgttgctctcacgtttggacatgagcaaaaccgggccacaaatt
ctggtgcttgcaccaacccgcgaactcgcgattcaggtggctgaagcgttccagaaatac
gcgggtaagctccccggtttccacgttatgccgatttacggcgggcaagattaccgcact
caattccgtcaactggaacgtggcgtgcaagtcgtcgtcggtacaccagggcgcgtgatg
gatcacctgcgtcgtggctcactgaaactcgatggtttgcaagctttggtgctggacgaa
gccgacgaaatgttgcgcatgggcttcatcgaagacatcgaatggatcatggagcaaacc
ccgccaacccgtcaaatcgcgctgttctcggcgactatgccgcctgcgattcaccgcatt
gcgcagagttatctgaccaacccggcggaagtcaaaatcaaggtcaaaaccacgacggcg
gacactattcgtcagcgttattggttagtcagcggcttgcacaagttggacgcgctcacc
cgcatcctcgaagctgagccatttgatgccgtgattattttcgtgcgcaccaaaacggaa
accgtggagctggctgatcgcctgcaagcacgcggttacagtgcggtcgcgctcaatggt
gatattccgcagaatgtgcgtgaacgtaccattgatcagttgaagaaaggcaaaatcgac
atcctgatcgctaccgacgttgctgcgcgtggtttggatgtggaacgcattagccacgtc
attaactacgatattccgacggataccgaatcctacgtccaccgtatcgggcgtaccggg
cgtgcagggcgtagtggtgatgcgattttgttcgtgtccccgcgtgaacgtcatttgctg
cgtgcgattgaacgtgctacccgcaaaccgattgacttgatggaattaccttccaccgag
attatcaataatcggcggatttcactgttcaatcaacgtattaccgataccttggcagaa
gagggtttggatttcttctcgcaactgctggaagcttatgagcgcgaacacaatgttcct
gcgattgagattgccgcagcactggcgaaactggtgcaaggcgatgcgccgttgttgctt
gaagagaagaaaaatcacccggcttacaacccggattccgcgcgtgaacgtgagcaagat
cagcgtaaaccgggtaagcgtaaagccaattcggcctttagcagcgatgaagaaaccatt
ccaatggaacgtttccgtattgctgttgggcgcactcacggggtgaaaccgggcaatatc
gttggtgcgattgcgaacgaagcgggcttagatagccgttacattgggcatatcgacatt
caggacgattttagcttggtggatttgccagcaggaatgccgaaagacattctgggcgat
ttgcgccgcacgcgcgttgcagggcaaatgcttaatattgaaccggcgggtgaatcggct
gcggattattcaccaagccgtaccagcggtggtggtggcggcggcggtcgtcgtccagag
cgtgacggtggcgggcgtggtcgttcgttcggtggtggtagcggttccgcgccgccgcgt
cgtcgtgaagcaggtaaaacgggtgaacgcccggatcgccgccctcgtgctgaaaaatct
gctggcggtgagcgtccacctagccgtccgaaaccgtctacgattagcagaaaacctgcg
tctgataaagacaagggtaagccgaagcgtaacgattga
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