Candidatus Thiothrix anitrata: J8380_16335
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Entry
J8380_16335 CDS
T07878
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
tani
Candidatus Thiothrix anitrata
Pathway
tani02020
Two-component system
tani02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tani00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
J8380_16335
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J8380_16335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tani03021
]
J8380_16335
Transcription machinery [BR:
tani03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J8380_16335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Peptidase_M85
HTH_38
Motif
Other DBs
NCBI-ProteinID:
QTR49772
LinkDB
All DBs
Position
3261149..3262618
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AA seq
489 aa
AA seq
DB search
MLKQGFDLRLGQTLSMTPQLQQAIRLLQLSSLELQEEIQQALEENPLLQLCEEAEDKDAS
NALQAGEAPNTTSEEASSTADTPQLDSEIPDELGHDAEWEDTYDTRSSNSDSNGDKDGFL
ENQQSADSGLQEHLLWQINMSNLSDTDKYIASLLIGSLDDAGYLCDSLDEIFALLSDDLL
VEMEDVEVVLKYIQHLDPPGVGARDLRECLLIQLEKYPETRLLFKARQLVEKHLDLMERR
DYKEIQKRLKIDQNDLEGMIVLLRGLQPRPGSAFSNSTPDYIVPDVFVRKFKGQWVVSLN
AQVTPSLQINQYYADMLGHVKSDSDSSYFKTNLQQARWLIRSVESRNSTLLGVAKAIVDR
QSAFMQYGEQAMKPLVLRDIAEELEMHESTISRVTTSKYMHTPRGVFEFKYFFSSQVDTD
TGSSCSSTAIRAMLKKLIAEESPATPLSDNQLTNLLNQQGINVARRTVAKYREAMSIAPS
HERKALLPS
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaacaaggatttgatctccggctgggtcagacattatccatgacacctcaattg
caacaggctatccgcttgctgcaattgtcttcgcttgaattgcaagaagaaatccagcag
gcactggaagagaatcctttgctgcaattatgcgaggaagcggaagacaaggatgccagc
aatgccctgcaagcgggtgaagctcctaatactacttcagaagaagcatccagcaccgct
gatacgcctcagcttgacagcgaaattcccgatgaactaggccacgatgccgagtgggaa
gacacttacgacacccgcagcagtaacagcgatagcaacggcgacaaagacggtttcctc
gaaaaccagcaaagtgctgacagtggcttgcaagagcatttgttatggcaaattaatatg
agcaatttatccgacacggataaatacattgccagcttgctgattggctctttggatgat
gccggttatttatgcgactccctcgatgagattttcgcactgttgagcgatgatttactg
gtcgagatggaggatgttgaggttgtgctcaagtacattcagcatcttgacccgcccggt
gtgggtgcgcgtgatttgcgcgaatgcctactcattcagctagaaaaatatcccgaaacc
cgtttgttgttcaaagcacgccagcttgtcgaaaaacatctggacttaatggaacgacgc
gattataaagaaatacagaaaagactaaaaatagatcagaatgatttggaaggcatgatc
gttttgttacgtggcttgcaaccccgacccggcagtgctttttctaattctacccctgac
tatatcgttcctgatgtttttgtacgcaagtttaaaggacagtgggtggtttcgttaaat
gcgcaagtaacgcctagcttacaaatcaatcagtattacgctgacatgctcggtcatgtc
aaaagcgacagcgattccagctatttcaagaccaatctgcaacaagcccgctggctgatc
cgtagtgtggaaagccgtaacagcaccttactcggtgttgcaaaagcaattgttgatcgt
cagagtgctttcatgcaatatggggaacaggcgatgaagcctttagtactcagggatatt
gcagaagagttagaaatgcacgagtccaccatctcacgcgtcaccaccagtaaatacatg
cacaccccacgcggtgtcttcgagttcaagtactttttttccagccaagtcgacaccgac
actggttccagttgttcatcaaccgcaatccgagccatgctcaaaaagctgattgcagag
gaaagtccagcaacccccctaagcgataatcaattgacaaacctgctgaatcagcagggc
atcaacgtggcacggcgaaccgtagccaagtaccgtgaagcaatgtctatcgctccatct
cacgagcgtaaagctttgcttccgagctga
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