Candidatus Thiothrix anitrata: J8380_16625
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Entry
J8380_16625 CDS
T07878
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
tani
Candidatus Thiothrix anitrata
Pathway
tani03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tani00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J8380_16625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tani03019
]
J8380_16625
Enzymes [BR:
tani01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J8380_16625
Messenger RNA biogenesis [BR:
tani03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J8380_16625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTR49824
LinkDB
All DBs
Position
complement(3321867..3323159)
Genome browser
AA seq
430 aa
AA seq
DB search
MENFYLSQTRFDSFALDEGLLASLRDAGFEYCSRIQAEVLPLALAGQDVAGQAQTGTGKT
GAFLVAVFQHLLRNPLVNAESGTVRCMILAPTRELAIQIARDAESLGQHTGLRTVLVYGG
AGYDKQRRQFEQPVDVLIGTPGRVIDYWKQHVFTLKQLQALVMDEADRMFDMGFIQDVRY
LMRKLPAPDKRLNMLFSATLSHRVLELAYEHMNNPQKVQIEAESVRADNIVEHVYFPANE
EKIPLLIGLIRQLTPFRAIVFVNTKHIAEKIDDYLRGNGITSDLISGDVRQNKRERLLKD
FEAGQFQVLIATDVAARGLHIPDVSHVFNFDLPQMAEDYVHRIGRTARAGASGEAHSFAC
EDTAFYLPEIEEYTGKSIPVTKITNTLLATDLVRPQRQQRERAPHHHGGDKRPPPRRNNN
GSRGNRPSAR
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatttctacttaagtcaaacacgtttcgattcattcgctttggatgaaggttta
ttggcatcattgcgtgatgctggttttgagtattgctcacggattcaagccgaagtgttg
ccgttggcattggcagggcaggatgtagcggggcaagcacaaactggtacaggtaaaacc
ggtgcgtttttggtggcagtgttccagcatttgctacgtaacccgttggtaaatgcggaa
tcgggcacagtgcgctgcatgattttagcccctacccgtgagttagcgattcagattgcc
cgtgatgcggaaagtctggggcagcacaccgggttacggactgtattggtttacggtggt
gcgggttacgataaacagcggcggcaatttgaacaaccggtggatgtgctgattggtacg
ccggggcgggtgattgattactggaaacagcatgtttttaccctcaaacagttgcaggcg
ttagttatggatgaagcagatcgcatgtttgacatgggctttattcaggatgtgcgctac
ttaatgcgcaaactgcctgcaccggataaacgtttaaatatgctgttttctgcaacactc
tcacaccgggtgttggaactggcttatgagcacatgaacaacccgcaaaaagtacaaatc
gaagcggaatcggtgcgtgctgataatattgtggaacatgtgtattttcccgccaatgaa
gaaaaaattccgttattgattgggctgattcggcaattgaccccgtttcgggcgattgtg
tttgtgaataccaaacacattgcggaaaaaattgatgattacttgcgtggcaatggtatt
acctcggatttgatttccggtgatgtgcgtcagaataaacgtgagcggctgctgaaagat
tttgaagcagggcagtttcaggtattgattgcgaccgacgtggcggcacgtgggttgcat
attcctgatgttagccatgtgtttaacttcgatttaccgcaaatggcggaagattacgtg
catcggattgggcgtactgcgcgggctggggcttcgggtgaagcgcacagttttgcgtgt
gaagataccgcgttttatttgccggagattgaagaatacacgggcaaatcaatcccggtg
acgaaaatcactaataccttattagcaacggatttggtacgtccgcaacgccagcagcgc
gaacgtgcgccgcatcatcatggtggtgataaacgcccgccgccgcgtcgcaataataat
gggtcacgcggtaatcgtccttcagctcggtaa
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