Candidatus Thiothrix anitrata: J8380_17165
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Entry
J8380_17165 CDS
T07878
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
tani
Candidatus Thiothrix anitrata
Pathway
tani03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tani00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
J8380_17165 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tani03400
]
J8380_17165 (recD)
Enzymes [BR:
tani01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
J8380_17165 (recD)
DNA repair and recombination proteins [BR:
tani03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
J8380_17165 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
UvrD-helicase
NAT10_TcmA_helicase
SH3_13
SLFN-g3_helicase
AAA_22
CbiA
AAA_33
AAA_16
nSTAND3
PIF1
CATASP
DEAD
AAA_28
DUF6866_C
UvrD_C
NTPase_1
TrwB_AAD_bind
MeaB
Motif
Other DBs
NCBI-ProteinID:
QTR49926
UniProt:
A0ABX7X2F6
LinkDB
All DBs
Position
complement(3428980..3430569)
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AA seq
529 aa
AA seq
DB search
MTPALTHPLDEQLAALLQRLGGTADVAGLRALVKYVSERTRNGVIAAPLAGLPGVDPAAL
QADVVGEPGDYKPIIVSATHAWLYRYWQYEERLAKQVRQRLTQGEGVTGIPALWIISGGP
GTGKTTRVTRLMADLLAQGVRSERILLAAPTGKAAMRMLESIRDTRERLQLPVEIAEQLP
TQARTLHRLLGYIPNRVGFRHHAQHPLPADVVIVDEASMIDISLMTHLFEAVSPTARLIL
LGDKDQLASVETGSIFRDLCEAPALQAHRQVLQRSYRFSESDGVGQLAQAIRAADETRLL
AVLAAEEFPSVSWDESGEGLQAQWLQDGWQAYVSAVQAGDVAAVFQAFNDLRILTPLRQG
RLGVEGLNPWVDNVMQRLLPTHAGALRPWYVGRPVMVTQNDYRQELFNGDIGIALPDAQG
VLRVWFPTAQAGEFRAVAPIRLPAHETAWAMTIHKSQGSEFTRVLLLLPDVEDSPLLGRE
LLYTAVTRAKQGIHVIASRATLQRALQQVMPPASCLQEKLFKPSPQPCS
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
ttgactcccgcactgacccatccgctagatgagcaacttgccgccttgctgcaacggctg
ggcggcacggcggatgttgctgggttgcgtgcgctggtgaaatacgtcagtgaacgtacc
cgtaacggggtgattgccgcaccgttggcggggttgcccggtgttgatcccgccgcgctg
caagcggatgtggtgggtgaaccgggtgattacaaaccgattattgtgagcgcgactcat
gcgtggctttaccgttactggcaatacgaagagcgtttggcgaaacaggtgcgccaacgt
ttgacacaaggggagggcgtaacaggcattcccgcgttgtggattatttccggcggcccc
ggtacgggtaaaaccaccagggtaacgcgcctgatggcagatttactggcgcaaggggtg
cgctcggaacgcattttactcgcagcacccacgggtaaagcggcgatgcgaatgctggag
tcgattcgcgatacccgcgaacgtttacaattgcccgtggaaattgccgaacagttgccg
acacaagcgcgtactttgcaccgtttgctgggctacattcccaaccgcgtggggtttcgt
caccatgcgcaacaccccttgccagcggatgtggttatcgtggatgaagcctcgatgatt
gatatttccctaatgacgcatttatttgaggcggtgtcgcccacagctcggctgatttta
ttgggtgataaagatcaattggcttcggtggaaacagggtcgattttccgcgatttgtgc
gaagctccggcgttgcaagcgcatcgtcaggtgttgcagcgtagttaccgtttcagcgag
agcgatggggtagggcagttagcgcaggcgattcgtgccgctgatgaaacccgcttgctg
gcagtgttagccgcagaggaatttcctagcgtttcgtgggatgaaagcggcgaaggtttg
caagcgcagtggttacaagatggctggcaagcgtatgtttcagcagtgcaagcgggtgat
gtggcggcggtgtttcaggcatttaatgatttgcgcattttaaccccgttgcgccaaggt
cgtttgggcgttgaaggcttgaatccgtgggtggataacgtgatgcaacgtttattaccc
acgcacgcgggggcgttgcgcccttggtatgtgggcagaccggtgatggtgacgcaaaac
gattaccgtcaggaattgtttaacggcgatattgggattgcgttgccggatgcgcaaggc
gtgttgcgggtgtggtttccgacggcacaggcgggtgagtttcgtgcggttgcgccgatt
cgtttgcctgcccacgaaactgcttgggcgatgacgattcataaaagtcaggggtcggaa
tttacccgcgtgctattgctgttgccggatgtggaagattcaccgctgctggggcgcgaa
ttgctatacaccgctgtgacccgtgcgaaacaggggattcatgtgattgcgagtcgcgct
acgttgcaacgcgcattgcagcaggtgatgccgcctgcctcgtgtttgcaggagaaactg
ttcaagccctcaccccaaccctgttcttag
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