Thiomicrospira aerophila: THIAE_00230
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Entry
THIAE_00230 CDS
T03589
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tao
Thiomicrospira aerophila
Pathway
tao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THIAE_00230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tao03019
]
THIAE_00230
Enzymes [BR:
tao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THIAE_00230
Messenger RNA biogenesis [BR:
tao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THIAE_00230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
DsrH
Motif
Other DBs
NCBI-ProteinID:
AHF00378
UniProt:
W0DSX7
LinkDB
All DBs
Position
complement(58524..59855)
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AA seq
443 aa
AA seq
DB search
MTFDQLALHPALVQAIADEGYTQPTPIQQAAIPLVLAGDDLMAAAQTGTGKTAGFTLPLL
HRLQNGQAAKPNQVRALILTPTRELAAQVHESVVNYGQHLPLRAGVVFGGVSINPQMMKL
RRGLDILVATPGRLLDLHQQNAVKFDQLEVLVLDEADRMLDMGFIHDLKRIAKLLPNKRQ
TLMFSATFSDSIKQLAHQFLNAPKQVSVTPPNTTTELVLQTVIPVDKAKKTELLIHLVAS
QNWQQVLAFSKTKHGANRICEKLISAGIPAAALHGNKSQGARTKALADFKANKIRVLVAT
DIAARGIDIDLLPHVINIDLPNVAEDYVHRIGRTGRAGSKGEALSLVCADEVDLLAEIEH
LTGKVLPRRFEDGFEPNHSVPETSLDRKPRRAKPAASSRPANGRTGAGKPGGRGGRSGGQ
GNKGSDSASAGKAPAKRGRWPSR
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgatcaactcgcactccatccggctttagtgcaagccattgccgacgaaggc
tatacccaacccacaccgattcaacaagccgcgattccattagtgcttgcgggtgacgac
ttaatggccgctgctcagactggaacaggtaaaaccgctggctttaccctgccgctgctc
catcgcctgcaaaacggccaagccgccaagcccaaccaagtacgcgcgctgattttaacc
cccacccgtgagctggcggcacaagtccatgaaagcgtggtcaactacggtcaacatttg
cccttgcgggcaggcgtggtatttggtggcgtcagcattaacccacaaatgatgaaactg
cgtcgcggtttagatattttggtagccacaccgggtcgtttgctcgacctccatcagcaa
aatgccgttaaatttgatcagcttgaagtgttggtgctagacgaagccgaccggatgctc
gacatgggctttatccatgatttaaagcgtattgctaagctgttgcctaacaaacgtcaa
acactgatgttttcggcgaccttttcagattcgattaagcagttagcgcatcaattttta
aacgcgccaaaacaagtatcggtgaccccgcctaataccactactgaattagtactacaa
acagtcatcccagtcgataaagccaaaaaaacggaattattgattcatttagtcgcctcg
caaaactggcaacaagtgctggctttctccaaaaccaaacacggcgctaaccgcatctgt
gaaaaactcattagtgccggcattccagcggccgcgttacatggcaataagagccaaggc
gcacggactaaagccctggctgattttaaagccaataaaattcgtgtgctggtagcgacc
gatatcgccgcgcgtggcattgatattgacctactaccccatgtcatcaacatagactta
cccaacgtggctgaagattatgtgcaccgtattggccgaacgggccgagcaggttcaaaa
ggtgaggcgttatctttagtctgtgctgatgaagtggatttactggccgagattgaacac
ctgactggtaaagtcttgccgcgtcgcttcgaagatggctttgaacccaatcattccgtg
cctgaaacctcattggatcgcaaacctcgtcgtgctaaacctgcggccagtagcaggcct
gctaatggtcgcactggcgcagggaaaccaggtgggcgtggtggacgcagtggtggccag
ggcaacaaaggcagtgactctgcctcagcaggcaaagcaccggctaaacgcggtcgttgg
ccaagccgctaa
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