Thiomicrospira aerophila: THIAE_01955
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Entry
THIAE_01955 CDS
T03589
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tao
Thiomicrospira aerophila
Brite
KEGG Orthology (KO) [BR:
tao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tao03016
]
THIAE_01955
Enzymes [BR:
tao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
THIAE_01955
Transfer RNA biogenesis [BR:
tao03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
THIAE_01955
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AHF00694
UniProt:
W0DUP9
LinkDB
All DBs
Position
complement(395995..397167)
Genome browser
AA seq
390 aa
AA seq
DB search
MNFQLITDDTALNTLCIELKQHKWLAVDTEFMRQDTFFAQLALIQIATPTLAVYIIDPLS
IKNLIPLWQLFSNTNITKVFHAARQDLEILYQQAECMPLPIFDTQIASVFLGLGDQASYA
RLIEKLCGENINKDQARTQWLDRPLLDEQLEYAAADVWHLAQAYPILLKSLTPTQRQAIQ
ADFNNLTDPSLYRTEPAQAWLRMKPSSSLSNKQLGLLKHLAAWREEQAVTLNQPRKWIVN
DEALIQLAKRPVREVQDLHKLNQFDGETIRQHGESLIRVLDKAMQDAENWPVAQKPITLS
HEQQIVLQVLHAISQQVAHEQGIHLPNLTNKHELTALLLQQPSQLNHGWRELLLGKLLKQ
FINGQSHLRLVHKNKHEQPKLSLSTSAVDI
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgaacttccaacttattacagatgacactgcacttaacaccctatgtatcgagctaaaa
caacataaatggcttgctgtggatactgaatttatgcgccaagatactttttttgcgcaa
ctcgcactgatccaaattgctactccgacccttgccgtttacataattgatcctttatcc
ataaagaatttaattcccttatggcaattattcagcaacactaacattacaaaagtattt
catgccgcccggcaagacttagaaattctttatcaacaggcagagtgcatgccattgcct
attttcgacacccagattgccagtgtttttttaggcttaggagaccaagcgagttacgcg
cgcttaattgaaaagctatgtggagaaaatattaacaaagatcaagctcgcacacagtgg
ctggatcgtccactacttgatgaacagcttgaatatgcagcagcagacgtttggcattta
gcacaagcctatccgattttgctaaagtcactcacccctacacaacgtcaagccattcaa
gctgattttaataacttgaccgacccgtcgctgtatcgaactgagccggctcaggcttgg
ctaagaatgaagccctcatctagcctgagtaacaaacaacttggtctactcaagcactta
gccgcttggcgagaagaacaggctgtcacacttaatcaaccgcgtaaatggattgtcaat
gacgaagcattaattcaattagctaagcgccctgttcgagaagtacaagacctccataaa
ctcaatcaatttgatggtgagacaattcgtcaacacggagaaagtcttattcgagtgctt
gataaagccatgcaagacgctgaaaactggcctgtcgcacagaaacccatcacattaagt
catgaacaacagatagtgcttcaagtcttgcacgcaattagtcaacaagtggctcatgaa
caaggtattcacctacccaatttaactaataaacatgaacttacggcactattgcttcag
cagccctctcaactcaaccatggctggcgcgaattattacttggcaagctactcaaacaa
tttattaatggacaatcccatttacgccttgtccataaaaataaacatgagcaaccgaaa
ctttcactctcaacctcagctgtagatatttaa
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