Thiomicrospira aerophila: THIAE_06855
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Entry
THIAE_06855 CDS
T03589
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tao
Thiomicrospira aerophila
Brite
KEGG Orthology (KO) [BR:
tao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tao03019
]
THIAE_06855
Enzymes [BR:
tao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
THIAE_06855
Messenger RNA biogenesis [BR:
tao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
THIAE_06855
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
WHD_HA2
nSTAND3
NACHT
ResIII
AAA_23
nSTAND_NTPase5
AAA_16
T2SSE
SLFN-g3_helicase
FtsK_SpoIIIE
SRP54
ABC_tran
PhoH
Motif
Other DBs
NCBI-ProteinID:
AHF01514
UniProt:
W0DX03
LinkDB
All DBs
Position
complement(1375531..1379466)
Genome browser
AA seq
1311 aa
AA seq
DB search
MSSFPKNPAELFPLITQAQSRDQFRLKRDLKRLNLSADTEQDKQAWLRWCERLQQSLDKV
QARKALVPTIHYDAALPVVGRRDELLDLIKNHQVVVIAGETGSGKTTQLPKLCLEAGRGV
MGRIGCTQPRRLAARSVAERLAEELGSSLGELVGYQVRFHDQVHETSLIKVMTDGILLAE
IQNDRFLSQYDTIIIDEAHERSVNIDFLLGILKQLLPKRPDLKVIITSATIDTARFAEHF
KQPGRAVPIVEVSGRTYPVEVRYRPLGQVEMDDGTVIEQDLTDGIIEALDELATHDPFGD
VLVFQIGERDIKETAEALRKQNLKNTEVIPLYARLSMSEQNKVFQTSNKRRIILSTNVAE
TSLTVPGIRYVIDPGLVRISRYSVRSKVQRLPVEKISQASANQRKGRCGRVADGICIRLY
SEEDFNARPEFTDPEIHRTSLSSVLLNMAQLKLGKVQNFPFIEPPEEKAVNDGYRQLIEI
GALDDKKQLTDAGRDLARLPLEPRIAKMVLEAEKNNVLAEVLIIAAAISIQDPRDINEQT
MQAARTKHKQWEDPRSDFLFFLNLWRFYEYQARHLSQNKLRKLCKTNYLSYLRLREWHDL
FHQLKVSLKSIGLKVGELHLYEEVTENGQTLERLSDLHSINLHRSLLAGLLGQIMMRDDA
QGYLGARGTKLFIHPSSVLFKRKPKWLMSAEMVETSKLYARTNAEIDVRWVEDCAPHLIK
RSYADPHWQKKTGQVGAYESVTLYGLPIVSRRVCNYGPINPKDARGIFIRALAQQEVNTR
AAFYQHNLKLIENIERYESKLRRPDLLVEEQVLQDFYAARIPEPIYNQPALESWLKKADK
KQQEALKLTESDLLKQDLDRQYERDFPDQIQLSQRIPLQLDYRFEPGKQQDGVVFKIPLA
GLNLVNESQFEWLTPGFIKEKITCYIKALPKQLRKQFVPAPAVAERVAQQISAEQGEFTP
QLIQALNRSAQHKIGLDDFHAVSLPAHLLPWYQLLDDKGKLIAESADLAELKRRYHHLVE
AKIQQSGGEKKQAVTEWNFGDLKDHETIKSHGKQLQAYPGLVIEQGQVFLTRSGDERQAT
KHHGYAVWALLKMQLHDKVKYLQKHLNLKQACLCFAPYGSCAHLTEQIIDKSLRRLVPEP
QAIRQHAQFVAALATLKADWVADAQTLAGLVTEILTGHQQLAKQVKGKVNPRWLASMDDI
KSQLDGLVNLNFVLETPDTWLKQMPRYLKALQLRLEKLDLDPQKDQHTQRQMLGLLADYD
ALAQRYGAHPPSELIELRWMLEELRISLFSQPMKTIQTVSINRLQKALAKL
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcatttcctaaaaatccagctgaacttttcccgttgataacacaagcgcaaagt
cgtgatcagtttcgattaaaacgtgatttaaagcggttaaatctgagcgctgacaccgag
caagacaagcaggcctggttgcgttggtgtgaaagattgcagcaatcgttggataaggta
caagcacgcaaagccttggtgccgaccatccattatgatgccgctttaccggtagtgggg
cggcgtgatgagttattggatttgattaaaaaccatcaagtggtggtgattgccggggaa
accggttcgggcaaaaccacccagcttccgaagctgtgtttagaagccggacgcggtgtg
atggggcgaattggttgtacgcaaccgcgacgtttggcggcgcgcagtgtggcggaacgt
ctggcagaagaactcggttcgagcttgggtgagttggtcggttatcaagtgcgttttcat
gatcaggtacacgaaaccagtttaatcaaagtgatgaccgacgggattttattagcggaa
atccaaaacgaccgttttctcagtcaatacgatacgattattatcgacgaggcgcacgag
cgcagtgtcaatattgattttctgcttggcatacttaaacagctgctgcccaaacgcccg
gatttaaaggtgattatcacctcggcgaccattgataccgcacgctttgccgagcatttc
aagcaacccggtcgggcagtgccgattgtcgaggtgtctgggcgcacctatccggtagaa
gtgcgctatcgcccgctgggtcaggtcgaaatggacgacggcacggtgattgagcaggat
ttaaccgatggcattatcgaggcgttggacgaattggcgacgcatgatccgtttggcgat
gtgctggtgtttcaaatcggcgagcgcgatatcaaagaaaccgccgaggcactacgcaaa
cagaatttaaaaaacaccgaagtcattccgctttatgcccgtttgtcgatgagcgagcaa
aacaaggtgttccaaacctccaacaagcgccgaattattctgtccaccaacgtcgccgaa
acctccctgacagtgccgggcattcgttatgtaattgatcctggcctggtgcgcatcagc
cgttatagtgtgcgttcaaaagtccagcgactgccggttgaaaaaatctcgcaagcctcg
gccaatcagcgtaaagggcggtgtggacgggtcgcggacggtatttgtattcgcttgtat
tccgaagaagattttaacgcgcgtcctgaatttaccgacccggaaattcaccgcacctcg
ttatcgtcggtgttattgaatatggcgcagcttaaactcggcaaggtgcaaaactttccg
tttattgaaccgccggaagaaaaagccgtcaatgacggttatcgccaactgattgaaatt
ggcgcgctggatgacaaaaaacaactgaccgacgccgggcgtgatttggcgcgcttaccg
ctcgaaccacgcattgccaaaatggtattagaagcggaaaaaaacaatgtgctggccgag
gtgttgattattgccgccgccatcagtattcaagacccgcgagacattaacgaacaaacc
atgcaggcggcgcgtactaagcacaaacaatgggaagacccgcgctcagactttttgttt
ttcctcaatttgtggcggttttatgaataccaagcgcgccacctcagtcaaaataaactg
cgcaaactctgtaaaaccaattacctgtcgtatttacgtttgcgcgaatggcatgattta
tttcaccagcttaaagtcagcttaaagtcgattggtttaaaagttggtgaactgcatttg
tatgaagaagtcactgaaaatggccaaacccttgaacggctgagtgatttgcatagcatc
aatctgcatcgatcgctactagcaggcctgcttgggcagattatgatgcgtgatgacgcg
cagggctatctgggtgcacgcggtaccaagctgtttattcatcccagctcggtgttgttt
aaacgcaaacccaaatggttgatgtcggctgaaatggtcgaaaccagcaagctttacgcg
cgtaccaatgccgaaattgatgtgcgctgggtcgaagattgtgcgccgcatcttataaaa
cgcagttatgcggacccgcattggcagaaaaaaaccggtcaggttggtgcctatgagtcg
gttaccttgtatggtctgccgattgtgagccgtcgcgtatgtaactacgggcctattaac
ccaaaagacgcgcgtggcatttttattcgggccttggcacaacaagaggtcaatacgcgt
gccgccttttaccagcataatctcaagctgattgaaaacattgagcgttatgaaagcaaa
ctgcgtcggccagacttgttagtcgaagaacaggtgctgcaagacttttatgccgcgcgg
attccggagcctatttataaccaaccggcgttagaaagctggttgaaaaaagccgataaa
aagcagcaagaagcgctaaagctgaccgaatccgatttattaaaacaggatttagaccgt
cagtacgagcgcgattttccagatcaaattcaactcagccagcgcatccccttgcaattg
gattaccgttttgagccaggcaagcaacaagacggtgtggtatttaaaattccgttagcc
ggtctgaacctggtgaatgaaagccagtttgaatggcttacgcccggatttattaaggaa
aaaatcacctgctatatcaaagccttgccaaaacaacttcgcaaacagtttgtgcccgcg
ccagcggtggccgagcgggtagcgcagcagatcagtgccgagcagggcgagtttacgccg
caactgattcaagcacttaatcgcagcgcacagcacaaaattggtcttgatgactttcat
gcggtcagcttgcccgctcatctgctgccttggtatcaactgctggatgacaaaggcaag
ttgattgccgaaagtgccgacctggctgagctcaaacgacgttatcatcatctggttgaa
gcgaaaattcagcaaagtggcggcgagaaaaaacaggcggtcaccgaatggaattttggt
gaccttaaagaccatgaaaccatcaaatctcacggcaagcaattacaagcctatccaggc
ctggtgatagagcagggtcaggtgtttttaacccgcagtggcgacgaacgccaggccaca
aaacaccatggttatgcggtctgggctttgttaaaaatgcaactgcacgacaaggtgaaa
tacctgcaaaaacatcttaatctcaagcaggcctgcttgtgttttgcgccctatggttcc
tgcgcccatttaaccgagcagattattgataaatccctgcgccgtcttgtgcccgaaccg
caagccatacgtcaacacgcgcagtttgtagctgctttggctaccctgaaagccgactgg
gtggccgatgcgcaaaccttagcaggcctggtgacggagattttaaccggccatcaacaa
ctggccaaacaagtgaaaggcaaggtgaatccgcgttggttggcttcgatggacgatatt
aaaagtcagttggatggtttggtgaatctgaattttgtgctggaaaccccggatacatgg
ctcaaacaaatgccgcgttatttaaaagccttgcaattgcgcctagaaaaactggattta
gacccgcaaaaagatcaacacacccaacgccaaatgctgggtttacttgccgattatgac
gccttggcacagcgttatggcgcacatccgccgtcagagttaatcgagttgcgttggatg
ctggaagagttgcgcatttcattgttttcacaaccgatgaaaaccatccaaaccgtgtcg
ataaatcggttgcaaaaggctttagcgaagttgtaa
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integrated database retrieval system
