Thiomicrospira aerophila: THIAE_09185
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Entry
THIAE_09185 CDS
T03589
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
tao
Thiomicrospira aerophila
Pathway
tao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THIAE_09185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tao03400
]
THIAE_09185
DNA repair and recombination proteins [BR:
tao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THIAE_09185
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
THIAE_09185
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
UVR
ResIII
DEAD
AAA_30
AAA_22
Kinesin
Collagen_bind_2
Microtub_bd
AAA
Motif
Other DBs
NCBI-ProteinID:
AHF01908
UniProt:
W0DXB4
LinkDB
All DBs
Position
complement(1840562..1842601)
Genome browser
AA seq
679 aa
AA seq
DB search
MAKAFELVSHYQPAGDQPAAIAGLVEGLQDGEAYQTLLGVTGSGKTFTMANVIQQVKRPT
IIMAHNKTLAAQLYGEMKGFFPKNAVEYFVSYYDYYQPEAYVPASDTYIAKDAAVNEQIE
QLRLSATKALMEREDVILIATVSAIYGLGDPDQYLSMMLQLRLGDKISQRDILARLATMQ
YSRNDIEMYRGMFRVRGDVVDVYPAEAEQYAVRIELFDDEVERLSWFDPLTGEQVAKVTR
ISVYPKSHYVTPRERVLETIDQVKIELKARLEELRSLNKLVEAQRLEERTRMDIEMMLEL
GYCQGIENYSRYLSGRGPGEAPPTLIDYLPKNALMIIDESHVTIPQIGGMYKGDRSRKEN
LVNYGFRLPSAMDNRPMKFEEFEQLMPQTIFVSATPAAYEFEHSSKIVEQVVRPTGLVDP
VLEVRPATTQVDDLLGEIRLCVAKAERVLVTTLTKRMAEDLTDYLEDHQVRVRYLHSDID
TVERIEIIRDLRQGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGR
AARNTEGRAILYADKITKSMQKAMDESLRRREKQLAFNETHGITPTALNKKVTDILEHSP
YASKAGRTSQRSAMVAEANGDFDVASIALLKPAELAKKIKQTEKQMYEAAKALDFELAAQ
LRDQVKQLKAGMVGVGDLR
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagcgtttgaattggtatcacattatcaacctgcgggcgaccaacccgctgcg
atagcaggcctggtagaaggtctgcaggatggcgaagcctatcaaacgctgcttggggtg
accgggtcgggtaagacctttaccatggcgaatgtgattcagcaggttaagcgtccaact
attattatggcgcataataaaaccttggctgcgcagttgtatggtgagatgaaagggttt
ttccctaaaaatgcggtcgaatattttgtttcttactatgattattatcagccggaggcc
tatgtgccggcatcagatacctatattgccaaagatgcggcggtcaatgagcagattgag
cagttgcgtttgtcggccaccaaggcgctgatggagcgtgaagatgtgattttgattgcc
acggtgtcagcgatttatggtctgggggacccggaccaatatttgagcatgatgctgcaa
ctgcgcctgggcgataaaatcagccaacgtgatattttggcgcgtttagcgaccatgcag
tacagtcgaaacgatattgaaatgtatcgcggtatgttccgggtgcgtggtgacgtggtg
gatgtctatccagctgaagctgaacagtatgcggtgcggattgaactgtttgatgacgag
gtagagcgtttgagttggtttgacccgctcaccggtgagcaggttgctaaggtgacgcgt
attagcgtttatccaaaatctcactatgttacgccgcgagagcgcgtgcttgaaaccatt
gatcaggtcaaaattgagttgaaggctcggttggaggagttacgcagtttaaataaactg
gttgaagcgcagcggcttgaagagcgcacgcgcatggacatcgagatgatgttggagcta
ggctattgtcaggggatagaaaattattcgcgttatttgtcggggcggggtccgggcgaa
gcaccaccgactttaattgattatttgcctaaaaatgctttgatgattattgatgaaagc
catgtcactattccgcaaattggcggcatgtataaaggtgaccgttcgcgtaaagaaaat
ttggttaactatggttttcgactgccttcggcgatggataatcgcccgatgaagtttgaa
gaattcgaacagttaatgccgcaaaccatctttgtttcagcgacccctgcggcttatgag
tttgaacacagctcgaaaattgttgagcaggtggtgcgcccaacaggcctggtggacccg
gtgcttgaagtgcgccccgccaccactcaggttgatgatttgctcggtgaaattcgattg
tgtgtggccaaggctgagcgggtgctggtgacgaccttaaccaaacgcatggccgaagat
ttaaccgattatttagaagatcaccaggtgcgggtgcgttacttgcattccgatattgat
accgttgagcggattgaaattattcgtgatttacgtcagggcgaatttgatgtgttggtc
ggtattaacctattgcgagaggggctagatattcccgaagtggcattagtggcgattttg
gatgccgataaggagggctttttgcgctccgaacggtcgttgattcaaacgattgggcgc
gccgcacgtaataccgaagggcgggcgattttgtatgccgataaaatcaccaagtcaatg
caaaaggcgatggatgaatccttgcgtcgccgtgaaaaacaattagcctttaacgagacg
cacggcattaccccgacggctttaaataaaaaagtgaccgatattttagagcactcgccc
tatgcctccaaagccgggcgcactagccagcggagtgcaatggtggctgaagcgaatggc
gactttgatgttgcgtctattgcgctgctaaaaccggctgagctagcgaaaaagatcaag
caaactgaaaagcagatgtatgaagcggcgaaagcgctcgattttgagctggcggcgcag
ttgcgtgatcaagttaaacagttaaaggcaggcatggttggcgtgggcgatttaaggtaa
DBGET
integrated database retrieval system
