Thiomicrospira aerophila: THIAE_09320
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Entry
THIAE_09320 CDS
T03589
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tao
Thiomicrospira aerophila
Pathway
tao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THIAE_09320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tao03019
]
THIAE_09320
03009 Ribosome biogenesis [BR:
tao03009
]
THIAE_09320
Enzymes [BR:
tao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THIAE_09320
Messenger RNA biogenesis [BR:
tao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THIAE_09320
Ribosome biogenesis [BR:
tao03009
]
Prokaryotic type
rRNA helicases
THIAE_09320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
AAA_19
Cas3-like_C_2
UvrA_inter
DUF6352
Motif
Other DBs
NCBI-ProteinID:
AHF01930
UniProt:
W0DTJ1
LinkDB
All DBs
Position
1876165..1877994
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AA seq
609 aa
AA seq
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MSENTVDITFESFNLIPQVLQALKDVGYETPSPIQAQAIPPILEGRDILGMAQTGTGKTA
AFALPLLSRVDIKNTNPQILVLAPTRELAIQVAEAFQSFAHHMKGFHVLPIYGGQEYGGQ
IRALKRGAQVVVGTPGRVMDHMRKGTLNLDNLQALVLDEADEMLRMGFIDDVEWVLEQTP
QDRQIALFSATMPKEVHKIASRHLNNPVEVIIKQKTGTASTITQSYWLVSGLHKLDALTR
ILEATEFDGMIIFVRTKTATIELAEKLEARGYAAAALNGDIAQNHRERIVDQLKKGKIDI
LIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFVAPRERRLLQ
QIERATNKKIDMLTLPSTQDINDQRVEKFKARITDALEQEGLEFYQQMIEDLQQASNVPA
LEIAAALAKLVQGDTPFFLEDKPMRQASFRDDDRGARGERDFGRERPARGRSDRFERGGD
RPERGDRAERAPRRPRADGPPESGMKRYRINVGFANGVKPGNIIGAIANEANIDGSSIRQ
LNIQDSFSLVDLPADLSKAQLATLKKTWICGQPADLTEVRDTAAAPGARPKLSRKPAGAP
RTKRSMGSV
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaacaccgttgatattacatttgaaagcttcaacctgatcccacaagtttta
caagcccttaaagatgtcggttatgaaacaccttcaccgatccaggcgcaagcaattcca
ccgattttagaaggccgtgacattttaggtatggcgcaaacgggcaccggtaaaaccgcc
gccttcgcactaccattactatcacgtgtcgatattaaaaacaccaacccacagattctg
gtactcgcgccaacacgcgaattggccattcaggtcgctgaagctttccaaagctttgcg
catcacatgaaaggttttcatgtattacctatctatggtggtcaagaatatggcggtcag
attcgtgcgctaaaacgcggtgcgcaagtagttgtaggcacgccaggccgtgtgatggat
cacatgcgcaaaggcactttaaacctagataacttacaggctttggtattagatgaagcc
gacgaaatgctacgtatgggctttattgatgacgtagagtgggtattagaacaaacaccg
caggaccgtcaaattgccttgttctcggcgactatgcctaaagaagtgcataaaattgcg
agcaggcatttgaacaacccagttgaagtcattatcaaacaaaaaaccggtaccgcttca
acgattacccagtcttactggttggtgagtggtttacataagctagatgcgttaacacgc
atcctagaagcgaccgaatttgatggcatgattattttcgtgcgcaccaaaaccgctacc
attgaattggctgaaaagctcgaagcgcgtggctatgctgcagctgccttaaatggtgac
attgcacagaatcaccgtgaacgtattgttgatcagcttaaaaaaggcaagattgatatc
ttgattgccactgacgtcgtggcacgtggtttagacgttgagcgtatcactcacgttgta
aactatgacattccttatgatactgaaagctatgttcaccgcattggccgtactggtcgt
gccggtcgttcaggtaatgcgattttgtttgtggcaccacgtgaacgtcgtttgttgcag
caaattgagcgtgcgaccaataaaaagatcgacatgctaacgctaccaagcacgcaggac
attaacgatcaacgcgttgaaaagttcaaggcgcgtattaccgatgcgttagagcaagaa
ggcttagaattctatcaacaaatgattgaagacttacaacaagcgtcgaatgtaccagca
ttagaaattgctgctgccttagcaaaactggttcaaggcgatacgcctttcttcctagaa
gacaagccaatgcgccaagccagcttccgtgacgacgatcgcggtgcccgtggtgagcgt
gactttgggcgcgagcgtccagcacgtggtcgcagtgatcgttttgaacgcggcggtgac
cgtccggagcgtggtgatcgtgcagaacgcgcgccacgtcgtccacgcgcagatggccca
cctgaatcaggtatgaagcgttaccgcattaatgtcggttttgcgaatggtgttaaacca
ggcaatattattggtgccattgccaatgaagcgaatattgacggttcatcaattcgtcag
ttgaatattcaggatagcttcagtctcgttgatttgccggccgatttatctaaggcgcaa
ttggctacgctgaaaaaaacctggatttgtggtcaacctgcagatttaaccgaagtacgc
gacaccgctgcagcaccgggcgcgcgtccaaagttgagccgcaagccagccggtgcacca
cgtactaaacgtagcatgggttcagtctaa
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