Thiomicrospira aerophila: THIAE_10040
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Entry
THIAE_10040 CDS
T03589
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tao
Thiomicrospira aerophila
Pathway
tao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THIAE_10040 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tao03021
]
THIAE_10040 (rho)
03019 Messenger RNA biogenesis [BR:
tao03019
]
THIAE_10040 (rho)
Transcription machinery [BR:
tao03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
THIAE_10040 (rho)
Messenger RNA biogenesis [BR:
tao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
THIAE_10040 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
S1CSD-TOTE-2
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AHF02052
UniProt:
W0DUC6
LinkDB
All DBs
Position
2018724..2019980
Genome browser
AA seq
418 aa
AA seq
DB search
MNLTDLKKLSAASLLDMANDMGLDNLARQRKQDIIFAILKGHAQKGEDIFGEGVLEILPD
GFGFLRSGDGSYLAGPDDLYVSPSQIRRFGLRTGDTVQGKIRPPKEGERYFALLKVDKIN
FEDPDVARKKIAFENLTPLHAEERLKMELGNGSTEDITPRIIDLASPIGKGQRGLIVAPP
KSGKTVILQSLAQSIAENHPECYLIVLLIDERPEEVTEMQRTVKGEVIASTFDEPATRHV
QVAEMVIEKAKRLVEHKTDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHRPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLSRAIAEKRTFPAINL
TKSGTRKEELLTTPEELQNIWILRRFLHTMNEIEAIETLIDQMKVSKTNAQLFTSMKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaactgatctaaaaaaattatccgccgcatcattgcttgatatggccaacgac
atgggccttgataacctcgcccgtcagcgcaaacaagacattatttttgccattcttaaa
ggccacgcccaaaagggtgaggatatctttggcgaaggcgtcttggaaatcttacctgac
ggctttggtttcctgcgttcaggagatggctcttatttagccggccctgacgacctttat
gtgtcgccctcacaaattcgccgcttcggtctgcgtaccggcgacaccgttcaaggcaaa
attcgtccgcctaaagaaggcgagcgttattttgcattactcaaggttgataaaatcaac
tttgaagaccctgatgtcgcccgtaaaaaaattgcctttgaaaacctgacgccgcttcat
gctgaagaacgtttgaaaatggaattgggcaatggcagcaccgaggatattacccctcgc
attatcgatttggcatcaccgattggtaaaggccagcgtggtttaattgtcgcaccaccc
aagtccggtaaaaccgttatattacaaagcctggcgcagtcgattgctgaaaatcaccca
gagtgctacttaattgtattgctgattgatgagcgtcctgaagaagtgaccgaaatgcaa
cggaccgttaaaggtgaggtcattgcctctacctttgatgagccggcaacgcgtcatgtt
caagtagccgaaatggttatagaaaaagccaagcgcctggttgaacacaaaacggacgta
gtcattctactcgactcgattacgcgtctagcacgtgcttacaataccgtggtacccgca
tcaggaaaaatcctcaccggcggtgtcgatgccaatgccctacaccgtccaaagcgtttt
tttggtgccgcacgtaatattgaagaaggcggatctttaaccattatcgccactgctttg
gttgacaccggctctaaaatggacgaagttatctttgaagaattcaaaggcaccggtaac
atggaactgcatttatcacgggccattgccgaaaaacgcaccttcccagcgatcaatctg
accaagtcaggtacccgtaaagaagaattgctcaccacgccagaagaactgcaaaacatt
tggattttgcgtcgcttcttgcacaccatgaatgaaatcgaagcgattgaaaccttgatt
gaccaaatgaaggtcagcaaaaccaatgcgcaactatttacatccatgaaacgctaa
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