Terribacillus saccharophilus: GZ22_16935
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Entry
GZ22_16935 CDS
T03216
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tap
Terribacillus saccharophilus
Pathway
tap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GZ22_16935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tap03019
]
GZ22_16935
03016 Transfer RNA biogenesis [BR:
tap03016
]
GZ22_16935
Enzymes [BR:
tap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GZ22_16935
Messenger RNA biogenesis [BR:
tap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GZ22_16935
Transfer RNA biogenesis [BR:
tap03016
]
Prokaryotic type
tRNA degradation factors
GZ22_16935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
S1_RRP5
CSD
OB_Dis3
RNase_II_C_S1
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AIF68150
UniProt:
A0A075LN58
LinkDB
All DBs
Position
3288595..3290886
Genome browser
AA seq
763 aa
AA seq
DB search
MMEEIKQKILAYFKENAAKPLTVEEIEEQLTLDEASEFTVLVKGLNELETEGQLVRTRSN
RFGLPEKLNLVRGKIQMHAKGFAFLIPDEEGVADVYIHYSDLQSAMNNDIVLVRIENQAE
GGQRREGQVVRILERAIAEVVGTYEDNGRFGFLIADDKRIPNDIFIPRGASGGATDGHKV
IARITKYPEGRMSAEGEVIRILGHKNDPGIDILSIIYKHGISTEFPPEVLEQAANTPDTI
DPAEIENRRDIRDMMTVTIDGADAKDLDDAVSVSRLENGNYRLVVSIADVSYYVEEGSPI
DEEALERATSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTLTCDMQITPQGEVVEHEIYQ
SVIKTNERMTYGDVNRILLEDDQELKDRYSDLVPMFQQMEDLAAALRKKRMDRGAIDFDF
PEARVAVDEEGKAIDVILRERSVAEKLIEEFMLAANETVAEHFHWMDVPAIHRIHTDPDP
DKLQNFFEFITSLGYTVRGSSSDIHPQTLQKIVERVRGTQEEMIINRLMLRSMQQAKYDP
QGLGHFGLATKFYTHFTSPIRRYPDLIVHRLIRTYIVNNQLDKKTQDHWKERMPEIARQS
SERERAAVDAERETDDLKKAEFMQDKVGEEFDGVISSVTGFGLFVELPNTIEGLVHVSYL
TDDFYHFDDKRYAMIGERTGNQFRIGDEITIRVVKVNIEERIIDFEVVGMKPRKPRENRD
RPTIIKAEKKNKPGDHRPPKNKGKKKPPARGKKSKKRNTRKRP
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
ataatggaagaaatcaaacagaaaatattggcttatttcaaagaaaatgcggctaagccg
ttaacagtagaagaaatcgaggagcaattaacgctcgatgaagcaagtgagttcactgtc
cttgtcaaagggctgaatgaactggaaacagaaggacagcttgtaagaacgagaagcaac
cgcttcggtctgcctgaaaaattgaatctcgtgcgaggaaagatccagatgcatgcaaaa
ggctttgctttcctcataccagatgaagagggagtagctgatgtttatatccactattcc
gatcttcagtctgccatgaataatgatatagtgctggtacgcatcgaaaatcaggccgag
ggcggacagcgccgcgaaggacaagttgttcggatactagagcgagcaatagcggaggtt
gtcggtacatatgaagataatggccgtttcggcttccttattgccgatgataaacgtatc
ccaaacgatatctttataccgcgtggagcatcaggcggagcgactgatggacacaaagtc
atcgcaagaatcacaaagtatccggaaggacgcatgagtgcagaaggagaagttattcgc
atacttggtcataagaacgacccgggtattgatatactatccatcatttataagcatggc
atttccactgaattcccgccggaagtactggaacaggcggcgaatacaccagatacaatc
gatcctgcagagatagaaaaccgccgggacatcagagatatgatgaccgttaccatagat
ggtgcagacgcaaaggatttagatgatgcggtttctgtcagccgtcttgaaaatgggaac
tatcgtcttgttgtttccattgcggacgtctcttattatgtggaagaaggctctccaatt
gatgaagaagctttggaacgagcaacgagcgtctatcttgtcgaccgtgtaataccgatg
atccctcatcgtctttccaatggtatttgttctcttaatccacaagtggaccggcttacc
ttgacatgtgatatgcagatcacaccacaaggagaagtggtggaacatgagatttaccaa
agtgtcatcaaaacgaatgagcggatgacatatggagatgtgaaccggatattgctagag
gatgatcaggagctgaaagaccgctattcggatcttgttcctatgttccagcaaatggag
gatctcgccgctgcattgcgtaagaagcggatggaccggggagcaatcgactttgatttc
ccagaagcgcgagttgctgttgatgaagaaggaaaggcgattgatgttatccttcgggag
cgctctgttgcagagaagctgattgaggaattcatgcttgctgccaatgaaacagttgcg
gagcattttcactggatggatgtaccagctatccacaggattcatactgatccggatcca
gataagctgcagaatttcttcgagtttattacgagtttaggctatacagtcagaggatca
tcctcggatattcatcctcagactttgcagaaaatcgtggaacgggtaagaggaacgcag
gaggaaatgatcatcaaccgacttatgctgcgctcaatgcagcaggcgaaatatgatccg
caaggcttgggtcactttggtctggcgacgaaattctatacacatttcacttcgccaatc
cgacgttatccggatttgatcgtgcacaggttgattcgtacgtatattgtcaacaatcag
ctggacaaaaagacacaagatcactggaaagaacggatgcctgagatcgcgagacagtcc
tcggaacgagaacgtgctgctgtcgatgcagagcgggaaacagatgatctgaaaaaggca
gaatttatgcaagataaagtcggtgaggaatttgatggtgtcatcagctctgtcacaggc
ttcggattattcgtcgagctaccgaatacgattgaaggtctggttcatgtcagttacctg
acagatgatttctaccacttcgatgacaagcgttacgcgatgatcggggaacggacaggc
aatcaattccgtatcggggatgaaatcacaattcgcgttgtgaaggtaaatattgaagag
cgtatcatcgatttcgaagtggtcggcatgaagccgcgtaagccgcgagagaatcgtgac
cgtcctacaattattaaagccgaaaagaagaacaaaccaggtgatcatcgtccgccgaag
aacaaaggtaaaaagaagccaccggcaagaggaaagaaaagcaagaaacgcaacacaaga
aaaagaccataa
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