Thermus aquaticus: TO73_2817
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Entry
TO73_2817 CDS
T04117
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
taq
Thermus aquaticus
Pathway
taq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TO73_2817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taq03019
]
TO73_2817
03400 DNA repair and recombination proteins [BR:
taq03400
]
TO73_2817
Enzymes [BR:
taq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TO73_2817
Messenger RNA biogenesis [BR:
taq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TO73_2817
DNA repair and recombination proteins [BR:
taq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TO73_2817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C_2
Helicase_C
RNase_T
ResIII
RecQ_Zn_bind
RQC
DUF3253
Motif
Other DBs
NCBI-ProteinID:
ALJ92338
LinkDB
All DBs
Position
pTA78:14700..19754
Genome browser
AA seq
1684 aa
AA seq
DB search
MNAPSFFVALDLEATSPDPEEAEILELAAQDSQGRTFHRYLATNKPLSKDHEAFRITQIP
FEEYEREKVPPERALREFLDFLGGRSLLGHNLLRYDLPLLERALGEVGLNLPPEAYRALD
TLRLAHLVFPIPKDGLAGYRLGDLYHYLTQEELEGAHRAATDVGATWRILEALSQVQIPP
GVAQAWVELGLLEGQLFFPSGGAETEEVASQRVKDLLQAPARVERLHSQGRPMPSLEELL
QDRTLLPTRRPAQEEMLRLVDEALREGKRLFLEAPTGTGKTKGYLYPALRLGKDQRVWIA
THTKVLQAQLLEELKGLARAGYAVSAALVKSSRDTLCPEALLELFLDARKSEDEELRAAV
GVLIHYAALGESDLEALPAYWHFSRGFREAREHVGTNPRRCRPVCPFFQTCAYQKLLAHR
KGAQILVTNQAYLLAHFLREEPLDAPEEEEAEPKTPPDPHLVVDEAHHLEDVATEALTWV
LNHEELTHKLNRLAHPSKESGLLRDSRRLKELSSGARERAKEVREELLHRLRERLEGYTK
RMVALVSQLGTGDPQYGLTLGLSPHWKRLEDWPYLDREERGLMEDLRELREALKTIAEDP
RTLMARDLAPIGEYLRGALDLLHERRRVLFGKEALNSNLLHVTKLDPVTKSWMHLAQPVE
VASDLKAGLWPRFQSVVLTSATLSVPTEKDPEGFALLKKVLGIEGAEGQRLPPSLPYEKA
HLIVPRHLPEARESTLPRFQRMLHQELHTLLGHTRRSLTLFTSLKRLEAAKKALEGHPHL
LAPLTRREREDVAGRIKANPQEPVAALGSRSYMEGVDFPALNLVNLERIPFELPSPLLSR
RMDWVYEQGLDPWWDYYLPKSALAFAQAFGRLIRDQREGVGDGAFVLWDKKLLNAPYQEV
FYRVLPPGVHRHFPLTRKEFYDRLAEILGLNRESLPQEELEEEALKRLRALRQAGLDPEE
VARRIATEIFGLTLQEDRWNKQLEAIRAALEGKDLVVLLPTGYGKSLAFQIPALMQEGLT
LVISPLVALMKDQVDRLLELGLPAGAVHSLMRPAEQRSVLDEVRAGRVRLLYVSPERLNR
SESLWKLLQEKWQEGGLERVVFDEAHCLVEWGFDFRPDYLRALERLKGLAGVPRSFFTAT
LSPKDLHKLRETADLDAEPIRPPTFYRPNLRFVVSKVRGDLSKLKVLSRALMWLREEAKG
DGAVVYVTTRAEAERLAWALGRIFPDLTVEAYHAGLAPLVRREIQERFMSGQTQVMVATT
AFGMGVDKANIRLVVHWRPPLSLEEYIQQAGRAGRDGKEAYCLMLYTKADQGILSFMAGV
RNADSQRDFVLRLIEKLKQGSSLRGFRKEIYESVYQEKGVDEEALEAEEEEATLQPSRRE
LGLENLEQVLASLERCEVLEYEYQPGKVFIQCSEGVLQECLSEEELNSLRQAGYRGSERG
NFLDYTRLDEDSAQRLDEALYQAYREGKVPFYHYREPLLVIRAGPKLTEGYMAWDKEQME
LSRNARKRLDQVLAYVDRSQCRTQTLLHHLGEKREACGSCDVCRGDLGPWSGLEGLEDEE
LERAYRPLDTLLAFFAHAEDNNRSLASEHRYLGRTSVLMALRGKDRGPSGPLSGKYTDNP
LFGHLSFIKQKELEKAFDLALKEGYLEVKANYEGHPMFGLTAKGWARVRRKGREVRSGRL
QAQV
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcccccagtttctttgtggccctggacctcgaggccacctccccagacccagaa
gaggcggagatcctggaactggccgcccaggacagccaggggcgtaccttccaccgctac
ctggccaccaacaagcctctctctaaagaccacgaagccttcaggatcacacagattccc
tttgaggagtacgagcgcgagaaggtgcctccagaaagggcgctccgggagtttttggac
ttcctgggaggccgttccctcctggggcacaacctcctgcgctatgacctcccccttcta
gagcgggccttgggggaggtggggctcaacctcccgccagaggcctatcgtgccctggac
accctacggctagcccacctggttttccccattcccaaagacggcctggctgggtaccgg
cttggcgacctgtaccactacctaacccaggaagagcttgaaggcgcccaccgggccgcc
acggatgtgggggccacctggcggatcctggaggcgctttcccaggtccagatacctccc
ggggtcgcccaggcctgggtggagctggggctcctcgaggggcagctctttttccctagc
ggaggggcggaaacagaggaggtcgcctcccagcgcgtcaaggaccttctccaggcccca
gcccgagtggaacgtcttcacagccagggtcggcccatgccctctttggaagagctactt
caggaccggaccctgctgcccacccgccgcccggcccaggaggagatgctccgcttagtg
gacgaggccctgcgagagggcaagaggctgttcttagaggcccctaccgggaccggcaaa
accaaaggctacctctaccccgctttgcgccttggcaaagaccagcgcgtctggatagcc
acccacaccaaggtgcttcaggcccagcttctggaggagctgaaggggctcgcccgggcc
gggtacgccgtcagcgccgctttggtaaaaagctctagggacaccctctgccctgaggcc
cttctggaactctttctggatgcccgcaagagcgaggacgaggagctccgggccgccgtg
ggcgtcctaatccattacgccgctttgggcgaaagcgacctggaggcccttcccgcctac
tggcacttttcccgtggcttccgcgaggcccgggagcacgtgggcaccaaccctaggcgc
tgccgccctgtttgccccttctttcagacctgcgcttaccagaagctgctggcccacagg
aagggggcccaaatcctggtgaccaaccaggcttatctcctggctcacttcttgcgggag
gagcccctcgatgcgcccgaggaagaggaggcggagccaaagacccctcctgacccccat
ctggtggtggacgaggcccaccacctggaggacgtggccacggaagccctcacatgggtt
ctgaaccacgaggagcttacccacaagctcaaccgcttggcccacccctccaaggaaagc
ggccttcttagggacagccgccgcctgaaggagctttcctccggggctcgggaaagggcc
aaggaggtgcgggaggaactccttcaccgcctcagggagcggctggagggttacaccaag
cgcatggtagccctggtaagccaactgggtacgggagacccccagtacggcctgaccctg
ggccttagcccccactggaagcgcctggaggactggccttacctggatcgggaggagagg
ggcttgatggaggaccttagggagcttcgcgaagccctcaaaaccatcgccgaggacccc
cggaccctcatggctagagacctagcccccatcggggagtatctccgaggggctttagat
ttgctccatgaacgtaggcgggttcttttcgggaaagaggccttgaactctaacctcctc
catgtgaccaaactggaccccgtaaccaaaagctggatgcacttagcccagccggtggag
gtggccagcgacctcaaggcgggcctctggccccgcttccagagcgtggtcctcaccagc
gccacgctcagcgtgcccacggaaaaggaccccgagggcttcgccctgctgaagaaggtt
cttgggattgaaggcgcagaagggcagaggcttcccccctctttgccctacgaaaaggcc
cacctgatcgtcccccggcaccttcccgaggccagggaaagcaccctgccccgtttccag
cggatgctccaccaagaactccacactctcctgggtcacaccagaaggagcctcaccctt
ttcaccagtctgaagcgcctggaggcggctaagaaggctctcgaaggccacccccacctc
ctggcgccgctcacgaggcgggagcgggaggatgtggcggggcgcatcaaggccaatccc
caggagccggtggccgccttgggctcccggagctacatggagggggtggacttccccgcc
ctcaacctggtcaacctagagcggattccctttgagctcccctcccctctcctgagccgc
cgcatggactgggtttacgagcagggcctggacccctggtgggactactacctgcccaag
tcagccctggccttcgcccaggccttcggccgcctgatccgggaccagcgggaaggggtc
ggggacggggccttcgtcctgtgggacaaaaagctcctcaacgccccttaccaggaggtc
ttctaccgggtcctgccccctggggtccaccgccacttccccctcaccaggaaggagttc
tacgaccgcctggcagaaatcctgggcctaaaccgggaaagcctccctcaggaggagctg
gaggaggaggctttaaaacgcctccgggccctacgccaggcagggctggacccggaagag
gtggcccggcgcatcgccaccgagatcttcggcctcaccctccaagaggaccggtggaac
aaacagctggaggccatccgagccgccttggaggggaaggacctggtggtcctgctgccc
acgggctacggcaagagcctggccttccagatccccgccctcatgcaggaaggccttacc
ctggtgatctcccccctggtggccctgatgaaagaccaggtggaccgcctgctggagctg
gggctgcccgcgggcgccgtgcactccctcatgcgccccgcagagcaaaggagcgtcctg
gacgaggtccgggcgggccgagtcaggctcctctacgtgagcccggaaagactgaaccgc
agcgaaagcctctggaagctcctccaggaaaagtggcaagagggagggcttgagcgcgtg
gtctttgacgaggcccactgcctggtggagtggggctttgacttccggcccgactacctg
agggccctggagcgcttgaagggcttggcgggtgtgccgaggagctttttcacggccacc
ctttcccctaaagacctgcataagctccgggaaactgcggatctggacgcagaacccatc
aggccgcccaccttttaccggcctaaccttcgctttgtggtcagcaaagtccggggcgac
ctctccaagcttaaggttctgtccagagccctcatgtggctccgcgaggaggccaaaggg
gacggggccgtggtctacgtgaccacccgcgccgaggccgagcgcctcgcctgggctttg
ggccgcatcttccccgacctgaccgtggaagcctaccacgcgggcttggcccccctggtg
cggcgggagatccaggagcgctttatgagcggccagacccaggtgatggtggcgaccacc
gccttcggcatgggcgtggacaaggccaacatccgcctggtggtgcactggcgcccaccc
ctcagcttggaggagtacatccagcaggcgggccgggccggccgggatggcaaggaggcc
tactgcctgatgctctacaccaaggcggaccaaggcatcctgagctttatggcgggggta
aggaacgctgattcccagagggatttcgtccttaggttgatagaaaagctaaagcaaggg
tcctccttgcgcggcttccgaaaagagatctacgaaagcgtctaccaggagaagggggtt
gacgaggaagccctcgaggccgaagaagaggaggccaccctccagccctcccgaagggaa
ctgggcctggaaaacctggagcaggtcctggccagcttggagcggtgcgaggtgctggaa
tacgagtatcagccggggaaggtcttcatccagtgctctgaaggggttcttcaagagtgc
cttagcgaagaggaactaaactcgcttcgccaggcaggctacaggggtagcgaaaggggg
aattttctggactacacccgcctggatgaggactcggcccaacgtttggacgaggccctc
taccaggcttaccgggaaggcaaggtccccttctaccactaccgcgaaccccttctggtg
atccgagccggacccaagctcaccgagggctacatggcctgggacaaggaacagatggag
ctaagccggaacgccagaaagcgcctggaccaggttctggcttacgtggaccggagccag
tgccgcacccaaaccctccttcaccatctgggtgagaagcgggaggcctgtgggtcctgc
gacgtgtgccggggagacctaggcccctggagtggcctcgagggcttggaggacgaggag
ctggagcgggcttaccgcccccttgacacgcttctggcctttttcgcccacgcagaggac
aacaaccgctccctggcttcagaacacagataccttgggagaaccagcgtcctgatggcc
ctaagaggaaaggaccggggtccaagcggcccgctttccgggaagtacaccgacaatccc
ttgttcggccatctgtccttcataaaacagaaagagctggagaaggcctttgatctggct
ttgaaggagggctatctggaggttaaggccaactacgaggggcatccgatgtttgggcta
acggcaaagggctgggcccgggtgcgccgtaagggcagggaggtccgcagtggaagactc
caggcgcaagtttga
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