Thermospira aquatica: KDW03_11620
Help
Entry
KDW03_11620 CDS
T08758
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
taqu
Thermospira aquatica
Brite
KEGG Orthology (KO) [BR:
taqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
taqu03016
]
KDW03_11620
Enzymes [BR:
taqu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KDW03_11620
Transfer RNA biogenesis [BR:
taqu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KDW03_11620
Prokaryotic type
tRNA splicing ligases
KDW03_11620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
URA10112
UniProt:
A0AAX3BCS7
LinkDB
All DBs
Position
complement(2392970..2394118)
Genome browser
AA seq
382 aa
AA seq
DB search
MKLRGQFTDADILIRDIDDATRAQIKTLVDCPAFAGNKIIIMPDCHSGKGSVIGFTMKLG
DLVIPNIIGVDIGCGIEIYRIKTDHIDFEKLDRFIRHRIPSGFERRNHNPLAGSYEENYY
TSKLEKQIEKICNKIGLDPSVAFFSIGTLGGGNHFLEIDQDERGGFWLSLHSGSRHFGLQ
IAAYHQKRARQWISQHEKGWHFRDLEYLPLGQGGEEYLEDMRVAQKYAEINRRTMTRILL
EEFFHQDINETESIKSVHNYIDFDDGIIRKGAIRAHDGERLVVPLNMRDGVVIGRGKGRK
DWNLSAPHGAGRRMSRHQAKKQLSLEEFRKSMEGIWSSTVNVHTIDEAPMAYKPSKLILE
SLSENVDIEQIIKPVYNFKAVE
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgagaggacaatttaccgatgcagatattctgattcgcgatattgatgatgca
accagggcgcagatcaagacactggtggattgtcctgccttcgctgggaacaagatcatc
attatgccagactgtcactctggcaagggaagtgtcataggctttaccatgaagctaggg
gatcttgtaattcccaacattattggagtagatatagggtgtgggatagagatctatcgg
attaagactgaccacatagattttgaaaaacttgaccgttttattcgccatagaatccca
agcgggtttgagagacgaaatcacaaccctcttgcgggaagttatgaagaaaattattac
acctccaaactcgaaaaacagatcgaaaagatctgcaacaagataggattagatccatcg
gtggcctttttttccatcggaaccctgggaggggggaaccattttctagagattgatcag
gacgagaggggagggttttggctttctctccacagtggaagccgacactttggtcttcag
attgccgcctatcaccaaaagagagcccgtcaatggatctctcaacacgaaaaggggtgg
cattttcgcgatcttgagtatcttcctcttggacagggtggagaagaatacctcgaagat
atgcgggttgctcaaaaatatgccgagattaatcgtcgaaccatgacgagaatccttctc
gaggagtttttccatcaggatattaacgagaccgaaagtattaaaagtgtgcataactat
atcgactttgatgatggtattattcgcaaaggagccatacgtgcccatgatggagaacgt
ttggttgttcctctcaacatgagggatggggtagtcatcgggcgcggcaagggaagaaaa
gactggaatctctctgctccccacggagcagggaggagaatgtctcgccaccaggcgaaa
aaacagctttctctggaggaatttcgcaaaagtatggaaggcatatggtcatcaacagta
aacgttcacacaattgatgaggctcctatggcctacaaaccaagtaagctcatacttgag
agtctttctgaaaatgtggacatcgaacagatcatcaaacctgtttacaactttaaagca
gtagaataa
DBGET
integrated database retrieval system
