Thermoplasmatales archaeon BRNA1: TALC_00183
Help
Entry
TALC_00183 CDS
T02532
Name
(GenBank) putative RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)
KO
K07573
exosome complex component CSL4
Organism
tar
Thermoplasmatales archaeon BRNA1
Pathway
tar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TALC_00183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tar03019
]
TALC_00183
Messenger RNA biogenesis [BR:
tar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TALC_00183
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TALC_00183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
ECR1_N_2
OB_RRP5_4th
Zn_Tnp_IS91
Zn_ribbon_6
Prok-RING_1
DZR
DZR_2
HypA
DUF5029
Zn_ribbon_NOB1
TRAM
DUF3039
zf-C3HC4
Motif
Other DBs
NCBI-ProteinID:
AGI47197
UniProt:
M4YLF6
LinkDB
All DBs
Position
complement(158057..158602)
Genome browser
AA seq
181 aa
AA seq
DB search
MVLPGDEVAVEEEYVASDGTFVKDGKIYASQFGRLILDDDECVARVECPNAPNVLKIGDI
VYASIDDVRKTMAPATALCKEGSGRNISSSTVATIHVSKISPDYTNDVANEFRKGDLIRA
RVIGVTPSLQLTTKDEHLGVIRALCGTCKTEMTKRGKNVFCPKCKKSQPRKLADDYGDVK
I
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atggtcctcccgggcgacgaggtcgcggtagaggaggagtacgtcgcctccgacggaacc
ttcgtcaaggacggcaagatctacgcatcccagttcggcaggctcatcctcgacgatgac
gagtgcgtcgccagggtcgagtgccccaacgcccccaacgtcctcaagatcggggacatc
gtctacgccagcatcgacgacgtgaggaagaccatggcccccgccaccgcgctctgcaag
gagggttccggccgcaacatctccagcagtaccgtcgccaccatccacgtatccaagatc
tcccccgactacaccaacgatgtcgccaacgagtttaggaagggagacctcatccgcgcc
cgcgtcatcggcgtaaccccctcgctccagctcacgaccaaagacgagcacctcggggtc
atcagggccctctgcggcacctgcaagaccgagatgaccaagaggggcaagaacgtcttc
tgccccaagtgcaaaaagtcccagccccgcaagctcgccgacgactacggtgacgtgaag
atatga
DBGET
integrated database retrieval system
