Tardiphaga sp. vice278: FNL53_01150
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Entry
FNL53_01150 CDS
T11730
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
tarc Tardiphaga sp. vice278
Pathway
tarc02020
Two-component system
tarc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tarc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FNL53_01150 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FNL53_01150 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tarc03021
]
FNL53_01150 (rpoN)
Transcription machinery [BR:
tarc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FNL53_01150 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
ETF
Motif
Other DBs
NCBI-ProteinID:
QDM14717
LinkDB
All DBs
Position
complement(254497..256164)
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AA seq
555 aa
AA seq
DB search
MALTQRLEFRQSQSLVMTPQLMQAIKLLQLSNLDLSTFVEDELERNPLLERASDGSEPAI
AGEAGPERAEFTDHARDDSFSGQEGSGDSSDFSDRGISDGFDAPAPDEWMNRELGSRAEI
EQTLDTGLENVFSEEPSEAAARNAQDSAPTSYTEWGGGASSDDSYNLEAFVAAEVTLGSH
LAEQLAVAFTSPQLRMIGQYLIDLVDEAGYLPPDLGDVGERLGASAADVETVIGVLQKFD
PPGVCARSLSECLAIQLREQDRYDPAMQALVEHLDLLAKRDIASLRKICGVDDADLADMI
GEIRRLDPKPGLKYGSARTQTVVPDVYVRPGPDGGWHVELNSDTLPRVLVNQVYYSELSK
TIRKDGDKSYFTDCLQNATWLVRALDQRARTILKVATEIVRQQDGFFTQGVAHLRPLNLK
AVADAIQMHESTVSRVTANKYMATNRGSFELKYFFTASIASADGGEAHSAEAVRHHIKQL
IDNESPSVILSDDTIVERLREVGIDIARRTVAKYREAMRIPSSVQRRRDKQSMLGNALTA
PASSSSDRSRDTAPA
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgacgcagagactagagtttcgtcaatcccagtcgctggtgatgacgccgcag
ctgatgcaggcgatcaagctgctgcagctctctaacctcgacctctcgacctttgtcgag
gatgaactggagcgcaatccgctgctggagcgcgcgagcgatggcagcgagcccgcgatc
gccggcgaggccgggcccgagcgcgccgaatttaccgaccacgctcgcgacgacagcttt
tccggccaggaaggctcaggcgattcctcagatttttccgaccgcggcatcagcgacggc
ttcgatgctcccgcgcccgacgagtggatgaacagggaactcggcagccgcgccgagatc
gagcagaccctcgacaccggcctcgagaacgtgttttcggaggagccgtcggaagccgcg
gcccgcaatgcgcaggattccgcaccgacttcctataccgaatggggcggcggcgcctct
tccgacgacagctacaacctggaagcctttgtcgcggccgaagtgacgctgggcagccat
ctcgccgagcaactggcggtcgccttcacgtcgccgcagctgcgcatgatcgggcaatat
ctgatcgatctggttgatgaggccggttacctgccgccggacctcggtgacgtcggcgag
cggctcggcgcgtcggcagctgatgtcgagaccgtgatcggcgtgctgcagaaattcgat
ccgcccggcgtttgcgcgcggagcctgagcgagtgcctcgccatccagttgcgcgaacag
gaccgctatgatcccgcgatgcaggcgctggtcgagcatctggatctgctggccaagcgg
gacatcgccagcctgcgcaagatctgcggcgtcgacgacgcggatctggccgacatgatc
ggcgagatccggaggctcgatccgaagcccggcctcaaatacggctcggcgcggacccag
accgtggtgcccgatgtctatgtgcggcccggccccgacggcggctggcatgtcgagctt
aacagcgacacgctgccgcgcgtgctggtcaaccaggtgtattattccgaactgtcgaag
acgatccgcaaggacggcgacaagtcatacttcaccgattgcctgcagaacgccacatgg
ctggtgcgcgcgctcgaccagcgcgcccgcaccattctgaaagtcgcgaccgaaatcgtc
cgccagcaggatggtttcttcacgcagggcgtggcgcatctgcggccgctgaatctgaaa
gcggtggccgacgcgatccagatgcacgaatcgacggtgtcgcgcgttaccgccaataaa
tatatggcgaccaatcgtggcagttttgaattgaaatatttcttcaccgcctcgatcgcc
tccgccgacggcggcgaagcgcattcggcggaagccgtgcggcatcacatcaagcaattg
atcgataatgaaagcccatcggtcatcctgtcggatgataccatcgtggagcggctgcgt
gaggtgggcatcgatattgcgcgccgcactgtggcgaaataccgcgaggcgatgcggatc
ccttcatcggtgcaacgccggcgcgacaagcaaagcatgctgggaaatgccctgacggcg
cctgcctcctcctcttccgaccgttcccgcgacaccgcaccagcttga
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