KEGG   Tardiphaga sp. vice278: FNL53_01970
Entry
FNL53_01970       CDS       T11730                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
tarc  Tardiphaga sp. vice278
Pathway
tarc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tarc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FNL53_01970 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tarc03021]
    FNL53_01970 (rho)
   03019 Messenger RNA biogenesis [BR:tarc03019]
    FNL53_01970 (rho)
Transcription machinery [BR:tarc03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     FNL53_01970 (rho)
Messenger RNA biogenesis [BR:tarc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     FNL53_01970 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT S1CSD-TOTE-2 AAA Spore_III_AA
Other DBs
NCBI-ProteinID: QDM14853
LinkDB
Position
complement(428639..429904)
AA seq 421 aa
MREMKLQDLKAKTPAELVSFAEELGVENASTMRKQELMFASLKQLAIKETDIIGEGVVEV
LSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVN
TLNFEDPEKSKHKVNFDNLTPLFPDQRFRLELEDSTRRDLSARVIDIVAPIGKGQRALIV
APPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRKVSDKRTFPA
IDISRSGTRKEELITDPQLLKKMYVLRRILNPMGTMDAIDFLLDKLRNTKNNSEFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaatgaaactccaggacctcaaggccaagacgccagccgagctcgtctcgttt
gcggaagagcttggggtcgagaacgccagcaccatgcgcaagcaggagctgatgttcgcc
agtctcaagcagctggcgatcaaggaaaccgacatcatcggcgagggcgtcgtcgaagtg
ctgtccgacggcttcggcttcctgcgttcgccggatgccaactatctgccgggcccggat
gatatctacgtctcgccgtcgcagatccgccgcttcggcctgcgcaccggcgataccatc
gaaggccatatccgcagcccgaaagagggcgaacgctatttcgctctgctcaaggtcaac
accctcaatttcgaggatccggaaaagtccaagcacaaggtcaattttgacaatctgacc
ccgctgtttccggaccagcgcttccgcctcgagctggaagattccacccgccgcgacctg
tcggcccgcgtcatcgacatcgtggcgccgatcggcaagggccagcgcgcgctgatcgtg
gcgccgccgcgcaccggtaagaccgtgttgatgcagaacatcgcgcactcgatcaccgcc
aatcatccggaatgctatctcatcgtgctcttgatcgacgagcggccggaagaagtcacc
gacatgcagcgttcggtgaagggcgaggtcgtatcctcgaccttcgacgaacctgccgtt
cgtcacgtccaggtcgccgagatggtgatcgaaaaagccaagcgtctcgtcgagcatggc
cgcgacgtcgtgatcctgctggattccatcacccgtctgggccgcgcctacaacaccgtg
gtgccgtcgtccggcaaggtgctgactggcggcgtcgacgccaatgcgctgcagcgcccg
aagcgtttcttcggtgccgcgcgtaacatcgaggagggcggttcgctgaccatcatcgcc
accgcgctggtcgataccggctcgcgcatggacgaagtgatcttcgaagagttcaagggc
accggcaattccgagttgatcctcgaccgcaaggtgtccgacaagcgcaccttcccggcg
atcgacatctcgcgctccggcacccgcaaggaagagctcatcaccgatccacagcttctc
aagaagatgtatgtgctgcgccgcatcctcaacccgatgggcacgatggacgcgatcgac
ttcctcttggacaagctgcgcaacaccaagaacaactcggaattcttcgagtcgatgaat
acctga

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