Tardiphaga sp. vice278: FNL53_18015
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Entry
FNL53_18015 CDS
T11730
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tarc Tardiphaga sp. vice278
Pathway
tarc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tarc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FNL53_18015 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tarc03021
]
FNL53_18015 (rpoC)
03400 DNA repair and recombination proteins [BR:
tarc03400
]
FNL53_18015 (rpoC)
Enzymes [BR:
tarc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FNL53_18015 (rpoC)
Transcription machinery [BR:
tarc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FNL53_18015 (rpoC)
DNA repair and recombination proteins [BR:
tarc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FNL53_18015 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
S-Me-THD_C
PspA_IM30
DUF8806
Motif
Other DBs
NCBI-ProteinID:
QDM17631
LinkDB
All DBs
Position
complement(3797201..3801400)
Genome browser
AA seq
1399 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGQLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEEEYLRAQDEYGQDSFTA
MIGAEAIRELLKGLELEKLDVQLRVDMKETESEIKHKKLAKRLKIVEAFRYSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSVMRDGLPGQGKLYHAVAEIEHALH
AKVIHLHTKIKYRWEGLDENGKPVTRWYDTTAGRTMLGQVLPKSAKMPFDIINKLMTKKE
ISSVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPASKWKIVDGTRAL
AKDFEQQYNDGLITHGEKYNKVVDAWSKAGEEVAKEMMKEISSVKKDAHGVEQQINSIYM
MSHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQSDCGTKLGIKMRAIIDSGSVVASLASRILGRSA
CEDIRDPNTNKILIKRNTLMEERDVDLLQQAGIQEVKIRSALTCELVNGICGTCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSVIESNFDGKVTIKNEAI
AKNGEGHMVAMVRNMVIAISDADGTERAAHRIQYGARVHVAEGDTIKRGQRIAEWDPYSR
PLLTEVEGVIGFEDLIDGQSIAETLDESTGIAKRVVTDWRSSRAGADLRPAIVIKGKDGK
ILKLARGGEARYMLSPDAILSVDTGAKVKTGDILARVSTESAKTRDITGGLPRVAELFEA
RKPKDAAIIAEIGGTIRFGRDYKNKRRISIEPIDKNEETREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEI
TDQGETDMISGEQIDKIEFDQLNARAKEEGKKIATGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAVKRDKMILDEREKQ
ATIVPDAPDAETLMLPPAE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaattatgaatctcttcaatccgacgacgccggctcaggtcttcgaccag
atccggatttcgatcgcgtctccggagaagattctgtcgtggtcctacggcgagatcaag
aagccggaaaccatcaattaccgtaccttcaagcccgagcgcgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggattacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaagtgaccttgtcgcgcgtccggcgc
gagcgcatgggccatatcgagctcgcagcccccgttgcccacatctggttcctgaagtcg
ctgccgtcgcgtatcggccagctgctcgacatgaccctcaaggatctcgagcggatcctg
tactttgaatactacgtcgttctcgagccgggtctcaccgcgctcaaggaccgtcagctg
ctgtccgaagaagagtatcttcgcgcgcaggacgaatatggtcaggacagcttcaccgcc
atgatcggcgccgaggcgatccgcgaactgctgaagggcctcgagcttgaaaagctcgac
gtccagctgcgcgtggatatgaaagagaccgaatccgagatcaagcacaagaagctcgcc
aagcgcttgaagatcgtcgaggccttccgctactccggcaacaagccggaatggatgatc
ctgaccgtcgtgccggtgatcccgccggacctgcgtccgctggtgccgctcgatggcggc
cgcttcgcgacctccgatctcaacgatctctatcgccgcgtcatcaaccgcaacaaccgc
ttgaagcgcctgatggagctccgcgcgccggacatcatcatccgcaacgaaaagcgcatg
ttgcaggaagccgttgacgcattgttcgacaacggccgtcgcggacgcgtcatcacgggt
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgcttc
cggcagaatttgctcggcaagcgcgtcgactattccggccgttcggtcatcgtcgtcggt
cccgagctgcgtctgcatcagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctactcgcggctcgacgccaagggtctgtccaccacggtgaagcaggcgaag
aagctcgttgaaaaagagcgtcccgaagtctgggacatcctcgacgaggtcattcgcgag
catcccgtgctcttgaaccgcgcgccgacgctgcatcgtctgggcatccaggcgttcgag
ccggtgctgatcgaaggcaaggcgatccagctgcatccgctggtctgcgcggccttcaac
gccgacttcgacggcgaccagatggccgtccacgttccgctgtcgctggaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatcccgcgaacggtcagccg
atcatcgtgccgtcgcaggatatcgtgctcggcctgtactatctgtcggtgatgcgtgac
ggtctgcccggccagggcaagctgtatcatgcggtggcggagatcgagcatgcgctgcat
gcgaaggtcatccacctccacaccaagatcaagtatcgctgggaaggtctcgacgagaac
ggcaagccggttacccgctggtatgacaccacggctggccgcaccatgctcggccaggtc
ctgccgaagtcggcgaagatgcccttcgacatcatcaacaagctgatgacgaagaaggaa
atctccagcgtcatcgatcaggtctatcgtcactgcggtcagaaagagaccgtgatcttc
tgcgatcgcatcatggcgctcggcttctacaacgccttcaaggcgggcatctcgttcggc
aaggacgacatggtcgtgccagcgtcgaagtggaagatcgtcgacggcacccgtgcgctc
gcgaaggacttcgagcagcagtacaacgacggcctgatcacccatggtgagaagtacaac
aaggtcgtcgatgcctggtcgaaggccggtgaagaagtcgccaaggagatgatgaaggag
atttcctccgtcaagaaggacgcgcacggcgtcgagcagcagatcaactcgatctacatg
atgtcgcattccggtgcccgcggttcgccggcccagatgcgtcagctcgccggcatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgagacgccgatcatctcgaacttcaag
gagggcctgtcggttctcgaatacttcaactcgactcacggtgcccgtaagggtctcgcc
gataccgcgttgaagaccgcgaactccggttacctgacccgtcgtctcgtcgacgtggcg
caggactgcatcatcacgcagtcggattgcggcaccaagctcggcatcaagatgcgcgcc
atcatcgacagcggatcggtggttgcatcgctggcgtcgcgtatccttggccgttcggcc
tgcgaagacattcgcgatccgaacaccaacaagatcctgatcaagcgcaacaccctgatg
gaagagcgcgacgtcgatctgctgcagcaggccggcatccaggaagtgaagatccgttcg
gctctcacttgcgaactggtcaacggcatctgcggcacctgctacgggcgcgatctcgcc
cgcggcacgccggtcaaccacggtgaggccgtcggcgtcatcgcggcgcagtcgatcggt
gaacccggtacccagctcaccatgcgtacgttccacatcggtggcgccgcgcagatcaac
gagcagtcggtcatcgaatccaacttcgacggcaaggtcacgatcaagaacgaagccatc
gccaagaacggcgaaggtcacatggtggcgatggtccgcaacatggtcatcgcgatctcg
gacgccgacggcaccgagcgcgccgcgcatcgtattcagtacggcgcgcgcgtgcacgtg
gcggaaggcgacaccatcaagcgcggccagcgcatcgcggaatgggatccgtactcccgt
ccgctgctgaccgaagttgaaggcgtgatcggcttcgaggatctgatcgacggccagtcg
atcgccgagacgctcgacgagtccaccggtatcgccaagcgcgtcgttaccgactggcgt
tcgtcgcgtgccggcgcggatctgcgtcctgccattgtcatcaagggcaaggacggcaag
atcctcaagctcgcccgtggcggtgaagcccgctacatgctgtcgcccgacgccattctg
tcggtcgataccggcgccaaggtgaagaccggcgacattctcgcccgtgtttcgaccgaa
agcgcgaagacgcgtgacatcaccggcggtctgccgcgggtggccgaactgttcgaggcg
cgcaagcccaaggacgcggcgatcatcgcggaaatcggcggcaccatccgcttcggtcgc
gactacaagaacaagcgccggatctcgatcgagccgatcgacaagaacgaggagacccgc
gagtacctcattccgaagggcaagcacatccatctgcaggatggtgacatcgtcgaaaag
ggcgacttcatcgtcgaaggcaatcccgcgccgcacgacattctggcgatcaagggcatc
gaggaactcgctgcctacctggtcaacgaaatccaggaagtctaccgattgcagggcgtg
ctcatcaacgacaagcacatcgaagtgattgttcgtcagatgctgcagaaggtcgagatc
accgatcagggtgagaccgacatgatctcgggcgaacagatcgacaagatcgaattcgac
cagctcaatgcgcgcgccaaggaagagggcaagaagatcgccacgggaacgccggtactg
ctcggcatcaccaaggcgagcttgcagacccgttcgttcttctcggcagcgtcgttccag
gagaccacgcgcgtgctcaccgaagctgccgtcaacggcaaggtggatccgctcgaaggc
ctcaaggagaacgtcattgtcggccggcttatcccggcaggcaccggcgcctcgatggcg
aagatccgcgaagtcgcagtcaagcgcgacaagatgatcctcgacgagcgcgaaaagcag
gcgacgatcgttccggacgctccggatgccgaaaccctgatgctgccgcccgccgagtaa
DBGET
integrated database retrieval system
