Tardiphaga sp. vice154: FIU28_16275
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Entry
FIU28_16275 CDS
T11090
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tarv Tardiphaga sp. vice154
Pathway
tarv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tarv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIU28_16275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tarv03021
]
FIU28_16275
03400 DNA repair and recombination proteins [BR:
tarv03400
]
FIU28_16275
Enzymes [BR:
tarv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIU28_16275
Transcription machinery [BR:
tarv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIU28_16275
DNA repair and recombination proteins [BR:
tarv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIU28_16275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
DUF4249
IDH
Motif
Other DBs
NCBI-ProteinID:
QDM22536
LinkDB
All DBs
Position
complement(3486249..3487280)
Genome browser
AA seq
343 aa
AA seq
DB search
MGDTVTIQKNWQELIRPNKLQVTPGSDPTRFATLVAEPLERGFGQTLGNALRRILLSSLQ
GAAVQAVQIDGVLHEFSSISGVREDVTDIVLNVKDISIKMLGEGPKRMVIKKQGPGAVTA
GDIQTVGDVTVLNPDLQLCTLDEGAEIRMEFTVAAGKGYVAAEFNRPEDAPIGLIPVDSL
YSPVRKVSYKVENTREGQILDYDKLTMTIETNGALTPDDAVAYAARILQDQLNVFVNFEE
PRKEVAQEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPN
FGRKSLNEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatacagtaacgatccagaagaattggcaggagctgatccggccgaacaagctg
caggtgacccctggcagcgatccaacccgttttgcgaccctcgtggccgagccgctcgag
cgcggcttcggccagacgctcggcaatgcgctgcgccgcatcctgttgtcgtcgctgcag
ggcgcggccgtgcaggccgtgcaaattgacggcgtgctgcacgagttctcctcgatctcc
ggcgtgcgtgaagacgtcacggacatcgtgctgaacgtcaaggacatctcgatcaagatg
ctcggcgaaggcccgaagcgcatggtcatcaagaagcagggcccgggcgccgtgaccgct
ggtgacatccagaccgtcggcgacgtcaccgtgcttaaccccgacctgcagctctgcacc
ctcgacgagggcgccgagatccgcatggaatttaccgtcgccgccggcaagggctacgtt
gccgccgagttcaaccgtccggaagacgcgccgatcggcctgatcccggtcgacagcctg
tactcgccggttcgaaaggtttcgtacaaggtcgagaacacccgcgagggccagatcctc
gactacgacaagctgaccatgacgatcgagaccaacggcgcgctgacgccggatgacgcg
gtggcttacgccgcgcgcatcctgcaggaccagctcaacgtgttcgtcaatttcgaggag
ccccgcaaggaagtcgcgcaggagatcattccggatctcgccttcaacccggcgttcctc
aagaaggtcgacgagctcgaattgtcggtgcgttcggcgaactgcctgaagaacgacaac
atcgtctacatcggcgatctcgttcagaagtcggaagccgaaatgctccgcaccccgaac
ttcggccgcaagtcgctcaacgaaatcaaggaagtgctcgcccagatgggtctgcacctc
ggcatggaagtgcccggctggccgccggaaaacatcgacgagttggccaagcgcttcgaa
gaccactactag
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