Tardiphaga sp. vice154: FIU28_21810
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Entry
FIU28_21810 CDS
T11090
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tarv Tardiphaga sp. vice154
Pathway
tarv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tarv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU28_21810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tarv03019
]
FIU28_21810
Enzymes [BR:
tarv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIU28_21810
Messenger RNA biogenesis [BR:
tarv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIU28_21810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
QDM23487
LinkDB
All DBs
Position
4634265..4635698
Genome browser
AA seq
477 aa
AA seq
DB search
MTTFQEFGLAEPITRALKEENYTTPTPIQAQTIPIAITGKDVIGIAQTGTGKTASFALPI
LHRLLLDRIKVQPKHCRVLVLSPTRELSGQILESFNAYGRHMHLTSALAIGGVPMGRQVR
SLMQGVDVLVATPGRLIDLVQSNGLKLNLVEFLVLDEADRMLDMGFINDIRKIVAKLPIK
RQTLFFSATMPKDIAELAESMLKDPARVAVTPVASTVERIAQRVIQVDHSAKPTILAQIL
KSETVNRALIFTRTKHGADKVVKGLERAGIRADAIHGNKSQNHRERTLANFRSGEIKTLV
ATDIAARGIDVDGITHVVNFDLPNIPETYVHRIGRTARAGAEGIAISLCSGEEMAYLRDI
EKLIRISLPKEDRRTPGRNDVGPPPSQNRGGQNRNSRPSAPRSNDGAPGQNARNRRRPPG
GGNGGAPQPNRDNARHEPTARPATQAGAAPKEGMQGVAFLHRESRPNTTPNRTQRPR
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
ttgaccacctttcaggaattcggcctcgccgagcccattacccgtgcgcttaaagaagaa
aactacaccaccccaaccccgatccaggcgcagaccatcccgatcgccatcaccggcaag
gacgtcatcggcatcgcccagaccggcaccggcaagaccgcatccttcgcgctgccgatc
ctgcaccgcctgctgctcgaccgcatcaaggtgcagcccaagcattgccgcgtgctcgtg
ctcagcccgacccgcgaactgtccggccagatcctagagagcttcaacgcctacggccgc
cacatgcaccttacctccgcactcgccatcggcggcgtgccgatgggccgccaggtgcgc
tcgctgatgcagggcgtcgacgtcctcgtcgccacccccggccgactgatcgacctcgtg
cagagcaacggcctgaaacttaacctggttgagttcctggtgctcgacgaagccgatcgc
atgctcgacatgggctttatcaacgacatccgcaaaatcgtcgccaagctgccgatcaag
cgccagacgctgttcttctcggccaccatgccgaaggacatcgccgagctcgccgaatcg
atgctgaaggaccccgcccgcgtcgccgtgaccccggtggcgtccaccgtggagcgcatc
gcccagcgcgtgatccaggtcgatcactccgccaagccgaccatcctggcgcagatcctg
aagtccgagaccgtcaaccgcgcgctgatcttcacccgcaccaagcacggcgccgacaag
gtcgtgaagggccttgagcgcgccggcatccgcgccgacgccatccacggcaacaagtcg
cagaaccatcgcgagcgcacgctggcgaatttccgcagcggggaaatcaagacgctggtg
gcgaccgatatcgccgcccgcggcatcgacgtcgacggcatcacccatgtcgtcaatttc
gacctgccgaacatccccgagacctatgtccaccgcatcggccgcaccgcgcgcgccggg
gccgagggcatcgcgatctcgctttgctccggcgaggaaatggcgtatctgcgcgatatc
gaaaagctgatccgcatctcgctgcctaaggaagatcgccgcacccccggtcgcaacgac
gtgggtccgccgccctcccagaaccgtggcggtcagaaccgcaattcgcgcccgtccgca
ccgcgcagcaatgacggcgcgcctggccagaacgcgcgcaaccgtcgtcgccccccgggc
ggcggcaatggcggcgcaccgcaaccgaaccgcgacaacgcgcggcacgaaccgaccgca
cgtccggccacccaggccggcgctgcaccgaaagaagggatgcagggcgttgccttcctg
catcgcgagagccgacccaataccacgccgaaccgcacccagcgtccgcgctaa
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