Trichoderma asperellum: 36607087
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Entry
36607087 CDS
T10296
Symbol
MSP5, TrAFT101_004073
Name
(RefSeq) Pre-mRNA-splicing factor rse1
KO
K12830
splicing factor 3B subunit 3
Organism
tasp Trichoderma asperellum
Pathway
tasp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tasp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
36607087 (MSP5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tasp03021
]
36607087 (MSP5)
03041 Spliceosome [BR:
tasp03041
]
36607087 (MSP5)
03036 Chromosome and associated proteins [BR:
tasp03036
]
36607087 (MSP5)
Transcription machinery [BR:
tasp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
36607087 (MSP5)
Spliceosome [BR:
tasp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
36607087 (MSP5)
Complex B
36607087 (MSP5)
Complex C
U2 SnRNP specific factors
36607087 (MSP5)
Chromosome and associated proteins [BR:
tasp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
36607087 (MSP5)
TFTC complex
36607087 (MSP5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_EML_2
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
36607087
NCBI-ProteinID:
XP_024766149
LinkDB
All DBs
Position
2:complement(join(5365394..5365420,5365477..5366764,5366958..5369037,5369187..5369430))
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AA seq
1212 aa
AA seq
DB search
MATTSNMFLYSLTIQPPTNVVQAVLGQFAGTKEQLIITGAGSRLTLLRPDPSQGKVITLL
SHDIFGIIRSLAAFRLAGSNKDYLILATDSGRITIIEYLPRENRFNRLHLETFGKSGVRR
VIPGEYLACDPKGRACLVASVEKNKLVYVLNRNSQAELTISSPLEAHKPGVLVISMVALD
VGYANPVFAALEIDYTEVDQDSTGEALRELETQLVYYELDLGLNHVVRKWSEPVDSTASL
LFQVPGGNDGPSGVLVCGEENITYRHSNQEAFRVPIPRRRGATEDPSRKRTIVSGVMHKL
KGSAGAFFFLLQTEDGDMFKVTIDMVEDDEGNTTGEVRRLKIKYFDTVPAASSLCILKSG
FLYVASQFGNFSFYQFEKLGDDDEELEFTSDDFPVDAHASYNPVYFYPRPLENLVLVESI
PSMNPLLDCKIANLTGEDAPQIYTICGNGARSTFRTLKHGLEINEIVSSELPGIPSAVWT
LKLNRSEQYDAYIVLSFTNGTLVLSIGETVEEVSDSGFLTSVPTLAAQLLGDDGLIQVHP
KGIRHIRNGQINQWDAPQHRSIVAASTNAHQVAIALSSGEIVYFEMDEDGSLAEYDEKKE
MFGTVTCLSLGEVPEGRLRSSFLAVGCDDCTVRILSLDPESTLENKSVQALTAAPTSLAI
ISMEDSSSGGSTLYLHIGLYSGVYLRTVLDEVTGELTDTRQKFLGPKQVRLFQVTVQGRT
CVLGLSSRPWLGYADPITKSFVVTPLSYVDLEWGWNFTSEQCEEGIVGIQGQTLRIFSVD
RLGDTLIQNSIPLTYTPKKMVKHPEHPLFYVIEADNHTLSPDLCAKLLADPARVNGDSKV
LPPEEFGHPRGNRRWASCISVVDPLAEDGQVLQKIDLEENEAAVSLAIVTFASQDNETFL
VVGTGKDMVVNPRSFSDAYVHIYRFEQEGRGLVFIHKTKVEEPPMAIIPFQGRVLVGIGK
TLRIYDLGMRQLLRKTQAEAAPQLINSLSSQGNRIIVGDVQQGITYVVYKQTTNKLIPFV
DDTVARWTTCSAMVDYETVAGGDKFGNIFIVRSPQKASEEADEEQAGLHLLNARDYLHGR
SHRLDLMCHLYTQDIPTSITKTSLVVGGQDILLWSGLMGTIGVLIPFVTREDTDFFQSLE
QHLRAEDAPLAGRDHLMYRSYYAPVKGVIDGDLCERYTLLPNDKKQMIAAELDRSVREIE
RKISDIRTRSAF
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccacatccaacatgttcctttactcgctgacgatccagccgccaaccaatgtc
gtccaagcggtcctgggtcagttcgcggggaccaaggagcagcttatcatcaccggtgct
gggtcacggctgactctactgcggcctgatccgtcacaggggaaggtaatcactctcttg
tctcatgatatttttggcattatcaggtctctagcggcctttcgcctcgcaggcagcaat
aaggactacttgatcttagccactgactctggtcgaatcactatcattgagtatcttccg
agggagaaccgatttaacagattgcatctggagactttcgggaaatctggtgtgcggaga
gttattcctggagaatacctcgcgtgtgatcccaaggggcgtgcgtgtcttgttgcttct
gtagagaagaacaagctcgtatatgtgctcaaccgaaactcccaagcagaacttacaatc
tcctcgcctctcgaagcccacaagcctggtgttttggtcatttctatggtggcactagac
gtcggatatgccaatccggtgttcgccgccctagagatagactataccgaggtagatcaa
gattctactggggaagctttgcgagagctggaaacgcaactagtgtactatgagctcgat
ctcggactcaatcatgtcgtcagaaagtggtctgagcctgtagactcgacagcgtcactg
ctattccaggtgcctggtggcaacgatggcccaagtggcgtcttggtgtgtggtgaggaa
aacattacttatcgccattccaatcaagaggcttttcgagttccgatccctcggcgacga
ggtgcaacagaggatccttcaagaaagcgtaccattgtttccggcgtcatgcacaagcta
aagggcagtgcaggcgcgtttttcttcttactacaaacagaagacggcgacatgttcaaa
gtcacaatcgatatggtggaagatgacgaaggcaataccacaggagaggtcagaaggctc
aaaatcaagtattttgacacagtcccagctgcgtcgagtctctgcattttgaagagtggc
ttcctctatgttgctagccagttcggaaacttctccttctaccagtttgaaaaactggga
gatgacgatgaagagctagaatttaccagcgatgactttcctgtcgatgcacatgcttcg
tataaccctgtttatttctacccccgaccgctggaaaatctagttctcgtagagagcatt
ccttctatgaaccctctcctcgactgcaaaattgccaatctgaccggcgaggacgctcct
cagatttacaccatttgtggcaacggtgctcgaagcacattccgaacactaaagcatggg
cttgagatcaatgaaattgtatcttctgagctgccaggcattccatcagctgtttggacg
ctgaagctgaaccggagtgagcaatacgacgcgtacattgttctctctttcaccaacgga
actcttgtcctcagtataggagagacggtggaggaagtcagcgactccgggttcctgacc
agtgttcctactctggctgcccagctgctcggcgacgatggtctaattcaagttcatcct
aaaggcatcaggcacatccgcaatggacaaatcaaccaatgggatgccccgcaacatcga
tctatcgtggccgcctcgaccaacgctcaccaggtagcgattgctctaagttcaggtgaa
attgtctacttcgagatggacgaggacggttccctggcagagtatgacgaaaagaaagaa
atgtttgggacagtcacctgcttgagtctgggcgaagtccccgagggcagattgcgaagc
tcgttccttgcagtcggatgtgatgactgcaccgtccgtattttgagtctcgatccagaa
tctacacttgaaaacaaatcagtccaggcgctgacagctgcacctacctctctcgccatt
atatccatggaggactcatcttcaggcggctcaacactctacttgcatatcggcctctac
tcgggcgtctacctacgcacagttttggacgaagttaccggcgaattaacagacacaaga
caaaaattcttagggccaaaacaagtgagactattccaagtaacagtccaaggaaggacg
tgtgtgcttggtcttagctctcggccttggctcggatatgccgatcccatcaccaagagc
tttgttgttacacctctcagctacgttgacctagaatggggctggaattttactagcgag
cagtgcgaagaaggtatcgtgggtattcaaggacagactctgcgcattttctctgtcgat
cggcttggagacacgctgatccagaattctattcccctgacctatacgccgaagaagatg
gtgaagcatccagagcatcctcttttctacgtaattgaagcggacaatcataccctttct
cctgacctttgtgcgaagttgctcgccgacccagcacgtgtcaatggagactcaaaagtt
ctcccccccgaagaatttggccatcccagaggcaacagacgctgggcttcatgtatcagt
gttgttgatcccctggctgaagatggtcaagttctacaaaaaatagatctagaggaaaac
gaggccgcggtcagccttgccatcgttacgtttgctagtcaagataacgaaaccttcctt
gttgtcggaaccgggaaagatatggtcgtgaaccctcgcagtttttctgatgcctatgtc
catatttaccggttcgaacaggagggtaggggtttggttttcattcataaaacgaaggtc
gaagagcctccgatggccataattcctttccaggggcgcgtgctagttggcattgggaaa
acacttcgcatatacgatctcggcatgcgacaacttttgcggaagacccaggctgaagcg
gcaccacagcttattaattctttgagctcacaaggcaacagaattattgtgggagacgta
cagcaaggtataacatatgtcgtctataaacaaacgacaaataagctcattccttttgtg
gatgacacggttgctcgatggacaacttgctcagcaatggtagattatgagacagtggct
ggaggagacaaatttggcaatattttcatcgtacgctctcctcagaaggccagtgaagag
gccgatgaggagcaagcggggcttcacctgctaaacgcgagggactatcttcacggaaga
tctcatcgcttggatctgatgtgccacctctacactcaggacattccgacgagtattacc
aaaacgagccttgttgtcggagggcaggatatactgttgtggagcggcctcatgggcacc
attggtgtcctaattccttttgtcacccgagaggatacagactttttccaaagcttagaa
cagcacctaagggccgaagatgctccactcgcaggccgagaccatttaatgtatcgcagt
tattacgcacccgtgaagggcgtcatcgatggtgatctctgtgagagatacacactgctt
ccaaacgataagaagcaaatgattgcagcggagctggaccgctctgtccgagaaattgag
cggaaaatatcggatatccgaactcggtctgcattttag
DBGET
integrated database retrieval system
