Trichoderma asperellum: 36608690
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Entry
36608690 CDS
T10296
Symbol
TrAFT101_004813
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tasp Trichoderma asperellum
Pathway
tasp03018
RNA degradation
Brite
Enzymes [BR:
tasp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
36608690 (TrAFT101_004813)
Messenger RNA biogenesis [BR:
tasp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
36608690 (TrAFT101_004813)
Spliceosome [BR:
tasp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
36608690 (TrAFT101_004813)
Complex C
U4/U6.U5 tri-SnRNP related factors
36608690 (TrAFT101_004813)
Ribosome biogenesis [BR:
tasp03009
]
Eukaryotic type
Pre-60S particles
Helicases
36608690 (TrAFT101_004813)
Transfer RNA biogenesis [BR:
tasp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
36608690 (TrAFT101_004813)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
MTR4-like_stalk
DEAD
DEXQc_Suv3
Helicase_C
ResIII
Epiplasmin
AAA_22
nSTAND3
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
36608690
NCBI-ProteinID:
XP_024759822
LinkDB
All DBs
Position
3:complement(join(638833..639013,639088..642200))
Genome browser
AA seq
1097 aa
AA seq
DB search
MDDMFNVFDGKAEAPSDSEDERTPQKSRSRAQSKKRKADEAMNGNADADADATNDDADVG
MADAAEASRDEESEGEEDSDAPDKQDKKRRKKAEEAGPVMTDNFQTAESREVAGASTFVS
QDASLVLSHNIQHQVALPPDLNYEYIPLSEHKSPEEPARTYPFKLDPFQSLSVASIERDE
SVLVSAHTSAGKTVVAEYAVAQCLKRNQRVIYTSPIKALSNQKYRDFEAIFGDVGLMTGD
VTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIIMLPD
KVRYVFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFYPAGGKGARMVVDEK
GYFNEENFNLVMAEVEEKKGSDPADFTAKMKGKGKNKKTNKGGADEGSDINKIIRMTIKR
NFNPVIVFNFSKREVENMAVKISNLNFNDDSEKAMVNKVFQSAIESLSEQDRELPQIQNL
LPLLQKGVGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKW
DGVNIRPITSSEYVQMAGRAGRRGLDARGVVIMMIDDKLEPDVAKQIVTGQQDRLNSAFY
LGYNMILNLLRIEAISPEFMLERCFHQFQNAASVPSLEKDLMELQQERDALTIPDEATVK
DYYTIRQQLNTYTKDMRAVIQHPNYCLPFLQPGRLVQIHNPKESVEKIGGGLDFGWGVIT
DQYQRRAPKLGEPDYPPQESHIIEVLLYISKSSAEIIPGQPSGEMPPGLKPSTNDDGMFA
VVPCLLTCIKAISQIRIFMPKDGLKSDDDRKDSAKALSEVQRRFPDGVPILDPLENMDIS
DESFKQLLRKIEVLESRLVTNPLHMSPMLPSLWDQYHVKVQILEKIKEKKKEIAKAHSIA
QLDELKSRKRVLRRLGFINDAEVVQLKARVACEISSTEGHELLLSELLFDRFFNEMTPET
IAAVLSCFVFDEKIETQALKEELQKPYREIQAKARLIAKVSQESKLDVNEDQYAQSLKWQ
LMETIYAWAQGRPFVEICKMANVYEGSFIRIFRRLEELLRQMAQAAKVMGNDDLTKKFEE
SLGKIRRDIVAAQSLYL
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggatgacatgtttaatgttttcgacggcaaggcggaggccccaagcgacagcgaagat
gaaagaacgcctcagaagagccgtagcagagcccagagcaagaagcgcaaggccgacgaa
gcgatgaatggcaacgcggatgcggatgcggatgcgacaaacgacgatgcagacgtcggt
atggctgacgctgccgaggcttctcgagacgaggagtctgagggcgaggaggactcagat
gcgcccgataagcaggacaagaagcgacgcaagaaggccgaagaggctgggccggtcatg
acggacaatttccagacggcagagtcaagagaagtagcgggcgcctcaacatttgtttca
caggatgcgtcgctcgttctgtcacacaatattcagcatcaggtggctcttccacctgat
ctcaactacgaatacatccctctttcagagcacaagtcgcccgaagagcccgcgagaaca
tatcctttcaagctggatcctttccagagcttgtctgttgcatcgatcgagcgcgatgaa
agtgttctggtgtcggcacacaccagtgcgggaaagacggtggtggcagaatacgcggtc
gcacagtgtctcaagcgcaaccagagagtcatttacaccagtccgattaaggccttgagt
aaccagaaatacagagactttgaggccatttttggagatgttggattgatgactggtgat
gttacaatcaaccccacggcaagttgcttggtcatgaccaccgagattttgcgatcaatg
ttgtatcgcggttctgagattatgcgcgaagttgcttgggttgtgtttgacgaaatccac
tacatgcgagacaaaactcgaggtgtggtttgggaagagacaatcatcatgcttcccgac
aaggtccgatacgtttttctttctgccaccattccaaacgctttccagtttgcggaatgg
attgccaagatccaccaccaggcctgccacgtcgtttacaccgatttcagacctactccg
ctacaaaactacttttaccctgctgggggaaaaggcgccagaatggtggtggatgagaag
ggttacttcaacgaggagaatttcaaccttgttatggccgaagttgaagagaagaagggc
tctgaccctgctgatttcaccgccaagatgaaaggaaaaggaaagaacaagaaaaccaac
aagggcggtgctgacgaaggctccgacatcaacaagatcatccgaatgacgattaagagg
aattttaaccctgtcatcgtcttcaatttctccaaacgggaggttgaaaacatggcagtc
aagatttccaacctcaacttcaacgatgactcagaaaaggccatggtgaacaaggtcttc
cagagtgctattgagagtttgtcagaacaagaccgagaactgccacagatccagaacctg
ctgcctctgctgcagaagggtgttggtgtccatcactctggtctgctgccgattctcaag
gagacaatcgagattttattccaggagtccctgattaaagttttgttcgcaaccgagacc
ttctccatcggtctcaacatgcctgccaaaacagttgtctttactcaagttacgaaatgg
gatggcgtaaatatccgaccaatcacgtcatcggagtatgttcagatggctggacgtgct
ggtcgtcgtggtcttgatgcccgaggtgttgttatcatgatgattgacgacaagcttgag
ccagatgtggctaagcagatcgttactggccagcaggacagacttaactctgcattctac
ctgggctacaacatgattctcaaccttctcagaattgaagccatctctcctgagtttatg
ctggagagatgtttccatcaattccagaacgctgccagcgttccaagcctcgagaaggac
ctgatggagctgcagcaggagagggatgccctgacaataccagatgaggccacagtgaag
gattattatacaatcagacaacagctgaacacatacacaaaggatatgcgagctgtcatt
caacacccgaactactgcctacccttcttacagcctggccgccttgtgcagatccacaac
cctaaggagtcggtggagaagattggtggcggactcgactttggctggggtgttatcact
gatcaataccagcgacgagctcccaagcttggcgagcctgattacccgccccaagaatcc
cacattatcgaagtccttctctacatttccaagtcaagtgcggaaattattcctggccag
ccatctggtgaaatgccacccggcctgaagccatccaccaacgatgatggcatgttcgca
gtcgtgccgtgcctccttacatgcatcaaagccatcagccagatccgaatcttcatgcca
aaggatggcctgaagtccgatgacgatcgcaaagactccgcaaaggccttgagcgaagta
cagcgccgattcccagatggcgtgcccatcttagatccacttgaaaacatggatatctca
gatgaatctttcaagcagcttctccgaaaaattgaggtcctcgagtccagacttgtaact
aacccacttcacatgtctcctatgcttccttcattgtgggatcagtaccacgtcaaggtt
cagatattggaaaagatcaaggagaagaagaaggagattgcaaaggcccatagcattgca
cagctggatgagctcaaatccagaaagcgtgtcctgcgccgtctcggattcattaacgat
gccgaggtcgttcagctcaaggctcgtgttgcctgcgagatttcttccaccgaaggccac
gaactgctcttgtcggagcttctctttgatcgattcttcaacgagatgactcctgagacg
attgccgctgttcttagctgcttcgtattcgacgagaagattgagacccaagcattaaag
gaagagctgcagaagccttaccgcgagatccaggccaaggctcgactgattgccaaggtt
agccaggagtctaagctggatgttaacgaggaccaatacgcccagagcttgaagtggcag
cttatggagacgatatatgcgtgggcacagggacggccgtttgttgagatttgcaaaatg
gcaaacgtctacgagggttcgtttattcgtatcttccgccgtctcgaggagcttctgcga
caaatggcccaggccgcaaaggttatgggcaatgacgatctgacgaagaagtttgaggag
agcttaggaaagatcaggagagatatcgtagctgcccagagcttgtatctgtaa
DBGET
integrated database retrieval system
