Trichoderma asperellum: 36612301
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Entry
36612301 CDS
T10296
Symbol
MSP41, TrAFT101_005175
Name
(RefSeq) Pre-mRNA-splicing factor syf1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tasp Trichoderma asperellum
Pathway
tasp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tasp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
36612301 (MSP41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tasp03019
]
36612301 (MSP41)
03041 Spliceosome [BR:
tasp03041
]
36612301 (MSP41)
Messenger RNA biogenesis [BR:
tasp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
36612301 (MSP41)
Spliceosome [BR:
tasp03041
]
Complex B
Other components
Prp19-related factors
36612301 (MSP41)
Complex C
36612301 (MSP41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_8
TPR_15
RPN7
AbiH
Motif
Other DBs
NCBI-GeneID:
36612301
NCBI-ProteinID:
XP_024759458
LinkDB
All DBs
Position
3:join(1751037..1751081,1751139..1751309,1751361..1753598)
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AA seq
817 aa
AA seq
DB search
MAAPVADGRMDLFLVSNEDSVYEQDIVRDPTRVKPWLEYIDFKVRHGSVLEQAFVMERAC
VKLPRSYKLWKLYLTFRVKHVSKLNPAIHAAEYRKVNALFEKSLILLHKMPSIWEMYLKF
LMKQPLVTLTRRTFDRALRALPITQHNRIWSLYLPFANAASGETAVKIWRRYMQVHPEDA
EDLIELLILRGAYTEAAKRYIEILNDTRFSSKRGKGHYELWNEMVEMLVEHAPEIETSYE
NGVDVEGIIRSGIIRFSDQRGKLWVGLATYWIRRGSFERARDVFEEGITTVMTVRDFTLI
FDAYAEFEESIIGALMDVSNSRAGKGIEDEETDLELDIRMMRFENLMDRRPFLLNDVLLR
QNPNNVIEWEKRVALWGDKNVEVVQTYTDAITTINPKRAVGPFHQLWANYAKFYERGGDI
RNARIIMEKAVKVPFKSVAELADMWIEWAEMELRGENFDDAIRVMAKAIQAPKRSNVDYF
DEALSPQQRVHKSWKLWSFYVDMVESVSTLDEVKKVYERIFELRIATPQTVVNYANLLEE
HKYYEESFKIFERGLDLFSYPVAFELWNLYLTKAVDRKIGIERLRDLFEQAVEDCPPKFA
KTIYLMYGNLEEERGLARHAMRIYERATRAVSDEDRADMFNFYITKSASNFGLPSTRPIY
ERAITALPDSEAKEMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTNADFWTKWEQFEV
QHGNEDTFKEMLRIKRSVQAKYNTDVNFIASQALARSLQKPEGSPGAEAADPIAALEKQS
LAPQGFVAASTGPKDVHPRQETLASNPDAIDIDGLDD
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggcggctccagtagcggacggaagaatggacctctttcttgtttcgaacgaagattct
gtctacgagcaagatattgtccgcgatcccacacgtgttaagccatggctagagtatatc
gatttcaaggttcgccatgggagcgtcttggaacaagcttttgtgatggagcgtgcttgt
gtcaaattgccgcgatcatacaagctctggaaactttacctcacctttcgcgtgaagcat
gtttcgaagctcaatccagcaatccacgccgccgaataccgaaaagtcaacgctctattt
gagaaatcattgattctactacacaaaatgccgtcaatatgggaaatgtacctcaaattt
ctcatgaagcagccactggtcacactcacccgccgaacgtttgatcgagccctgcgagca
ctcccaattacgcagcacaatcgcatatggtcactgtatcttccttttgccaacgccgct
tcaggggaaactgcagtcaagatttggcgacgatatatgcaagtccatcctgaggacgcc
gaggacctcatcgagcttctcattctaagaggtgcttataccgaggccgcaaaacgatat
atagaaatcctcaacgacacacggttttcaagcaaacgtgggaaaggccactatgaactc
tggaacgagatggtcgaaatgctggtcgagcacgcacctgaaattgaaacgagctacgaa
aatggagttgacgtagagggcatcattaggtccggaataattcgatttagcgatcaaaga
ggcaaactttgggttgggcttgcgacatattggatcagaaggggaagcttcgagcgggcc
cgtgatgtctttgaggaaggcataacaaccgtcatgacagtcagagactttaccctcatt
tttgacgcttatgctgaattcgaagaatccataattggtgctttgatggacgtttcaaac
tcccgcgctggtaagggcatcgaagatgaagaaacggatttagagctcgacatacggatg
atgcgattcgagaatctaatggaccggcgtccatttcttctcaacgatgttttacttcga
cagaaccccaacaatgtcatcgaatgggaaaaacgggtcgcgctctggggtgacaagaat
gtcgaggttgttcagacttacacggatgcgattacaactattaacccaaagagggccgta
ggtccgtttcatcaactatgggctaactacgccaagttttatgaacggggtggagatatt
agaaacgctcgtatcatcatggaaaaggctgtcaaggtcccgtttaaatcagtggcagag
ctggccgatatgtggattgaatgggcggaaatggaactccgaggcgagaactttgacgat
gccatccgagtaatggcaaaggcgattcaagcaccgaagagatccaatgttgattacttt
gatgaggctttgtctcctcagcagcgggtgcacaaaagctggaaactttggagtttctat
gtggacatggtggagagcgtttcaactctagatgaagtgaagaaggtatatgagcgcatc
ttcgaattgagaattgcaactcctcaaacagttgtgaattatgccaatcttctagaagag
cataagtattacgaagagtctttcaagattttcgagcgtggcttggatcttttcagctat
ccagtggcctttgaattatggaatctgtatctcaccaaggccgtcgacaggaagattggc
attgagagattgcgagatctcttcgaacaggcggtagaggactgtcctccaaaatttgcc
aaaacgatatacctcatgtatggcaatttggaggaagaacgtggccttgcgcgccatgcc
atgcggatttatgaacgagcaacgcgtgcggtttctgacgaagatcgagctgatatgttc
aatttttacatcaccaaatcggcctccaatttcggcctgccatctacgagacctatttat
gagcgggccattacagctcttccagacagcgaagccaaggaaatgtgtctcaagtttgca
gatatggagaaacgattaggagagattgatcgggcaagagccatctatggacatgcctca
cagttctgcgacccccgaacgaatgccgatttctggacaaagtgggagcagttcgaggtt
cagcatggcaatgaggacacattcaaagaaatgctgcgtatcaagcgcagtgtccaagct
aaatacaacaccgatgtcaacttcatcgcgtcacaagctctggcacgaagtttacaaaaa
ccagaaggctccccgggcgcagaagctgccgatcccattgcggctctagagaaacagtct
ctggcgccgcagggcttcgtcgctgccagcacagggcccaaagatgtgcatccaagacag
gaaactttggcatcaaatccagatgctattgatattgatggtcttgatgactaa
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