Trichoderma asperellum: 36612402
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Entry
36612402 CDS
T10296
Symbol
TrAFT101_007990
Name
(RefSeq) uncharacterized protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tasp Trichoderma asperellum
Pathway
tasp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tasp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
36612402 (TrAFT101_007990)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tasp03019
]
36612402 (TrAFT101_007990)
Messenger RNA biogenesis [BR:
tasp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
36612402 (TrAFT101_007990)
mRNA degradation factors
5'-3' decay
Decapping complex
36612402 (TrAFT101_007990)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
36612402
NCBI-ProteinID:
XP_024758898
LinkDB
All DBs
Position
4:complement(join(4816173..4816467,4816530..4818763))
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AA seq
842 aa
AA seq
DB search
MSFFGFDTSGRNMHNSAAPGFSQPHDPFAGLSGHHDDGEDALDFEDTYDGLGDQLDDADD
AFNDDTFGGGAVSGAGAPNGKVGKDFDFFGQTAQVANAIEEEHLRFNRLQPTARASASQH
QTQPAASAQSYAQQPYAQQAYAQQSYGQSYYTEPVPIRTGYEKYNEPEPLPDLHVDQSIW
GIGPSKAAAAPKPAPQPVLSSSVGRKMMSLEEVEAAMRAQAKPSPQPAISELAAHQHAPS
GYPPAQHASPLPQHGHAQPVTILQRPQASQAKVTPTPAAKLPVPPGQHDQHNNFQRQPVP
PVQPMQILQNPNRLSTDAARTAVDQEHSQSPSVASKLAQMSAHPQLAHMSEEEKAAFLDQ
ETKRAKRNHKIWLLSKDNGVMTPQDKNFITRIQLQQLVSATGNPVEQSSDASLSEDFYYQ
VYSHIRAGQRQNPSQPLSNFAQTYLFQTGGRHGNMRRHGRPAENHIQRMEQQVQRAVEAA
KNKPKNPQLVIAGSLGKISFSNAKTPKPLLNIKRSAENEAHHHRAGSERKSPVSSLDRKT
ILRNAEKVYVTLMKIEDHVRLMPPPLTNQADQALQEKHREWATELEALNARLWEELKVHE
PIGVIVPHPFIAFLSCAKGKKAIPRIFPHLSFEQRTTIMTMIIYHLDQLDVVKGAAVSDD
ETGLNARMRENIDLFMSTVMPSLMQFFNDTGLDIVDGVLNLIATNLNVDAIAKTRVGVSM
LTLILSRAVLLKQTGGGAPEQWEKWDQTYETLFSRLEVSLPYMFPGSINSGSDVYVWQLL
AALGVSASNDQQTRLVLAVKDRVIGTISLAKTLPPTMAAERLSSVNLFLHSIGLDVDMLM
GQ
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgtctttctttggcttcgataccagtggccgtaacatgcacaattcggcagcccctggc
ttttcccaaccgcatgatccatttgccggtctctctggccaccatgacgatggcgaagat
gctctcgacttcgaagacacctacgacgggcttggtgatcagctagacgatgctgatgat
gccttcaatgacgatacatttggcggcggagcagttagcggcgcaggagcccctaacggc
aaggttggcaaagacttcgacttctttggacaaactgctcaagttgcaaatgccatagag
gaggagcatctccgcttcaaccggctccagccaactgcacgagccagcgcctcgcagcac
cagacccagcctgctgcctccgcccagtcatacgcccagcagccatatgctcaacaggcc
tacgcacagcagtcatatggacagtcttactatacagagcccgtgcccattcgcaccggc
tatgaaaagtacaatgaacctgagcctctcccggatttgcatgtcgaccagagcatttgg
ggcattggcccctccaaggccgctgctgccccgaaacccgctcctcagccagttctatct
agcagcgttggcaggaagatgatgagcttggaagaggttgaggcggccatgcgcgcgcaa
gcaaagccatcgccacagccagccatctcggagcttgctgcgcatcagcatgctccttct
ggctacccacccgctcagcatgcctctcctctccctcaacacggccacgcgcaacctgtc
accatcttacagcgacctcaagcctcacaggccaaggttacacccactccggcggccaag
ctgcctgtccctcccgggcagcatgaccaacacaacaactttcaacgacagcccgttccc
ccggttcagcccatgcaaatcctccaaaatcccaaccgcttgtctaccgatgcagctcgt
acagctgttgaccaagagcactctcaatcgccaagtgttgcctctaagctggcgcaaatg
agcgcccatcctcagctggctcacatgtccgaggaagaaaaggcggcgtttttggaccag
gagacaaaacgagcgaagcgtaatcacaagatttggcttctgtccaaggataacggtgtg
atgaccccccaagacaagaacttcatcactcgtatccagctccagcagctcgtttccgca
acaggcaaccctgtcgagcagagttccgacgcctccctctctgaggacttctattatcag
gtctatagccacattcgtgccggccagcgtcaaaatcctagccagcctctcagcaatttt
gctcagacctatcttttccagaccggtggccgtcatggcaacatgcgccgccatggtaga
cctgctgagaatcacattcagcgaatggaacaacaggtccagcgggctgttgaggcggcc
aagaacaagccaaagaatccccagctcgtaattgctggtagtttgggcaagatctccttt
agcaatgccaaaactccgaagcccctactcaatatcaagcgttctgcggagaacgaagct
caccaccaccgagcaggtagtgagaggaagtcacctgttagtagccttgatcgtaagact
attttgcgcaatgccgagaaggtctacgttactttgatgaagattgaagaccacgtcaga
ctcatgccccctcctcttaccaaccaagcagaccaggcactgcaggagaagcatagagag
tgggccacggaactggaggctctgaatgcccgactttgggaagaactcaaggtacacgag
cccatcggagtcatcgttcctcaccctttcattgccttcctgtcttgcgcaaagggcaag
aaggctattccccgaatcttccctcacctcagcttcgaacaacggactacaatcatgacg
atgattatctaccacctcgatcagctggacgtcgtgaagggagcggctgtgtccgatgac
gagactggtctgaacgcaaggatgcgagagaatattgacttgttcatgtcgactgttatg
ccatcactgatgcaattctttaacgacactggccttgacattgtggatggcgtgttgaac
ctgattgctacaaacctgaacgttgatgcgattgccaaaaccagggtcggagtttcaatg
ctcaccctgattcttagccgtgctgtgcttcttaagcagactggtggcggcgcccctgaa
caatgggagaagtgggaccaaacatacgagaccctcttcagccgactggaagtgtcgctg
ccctatatgttccccggcagcatcaattccggatcagatgtctatgtctggcagctcctt
gcagctctcggtgttagtgccagcaacgaccagcagactcgcttagtccttgccgtcaaa
gacagggtcattggcaccatctctctagcaaagacccttcccccgacaatggcagcggag
cggcttagcagtgtcaacttgttcctgcattccattggcctggatgtagacatgttgatg
ggacagtaa
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