| Entry |
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| Symbol |
PAN2, TrAFT101_002850
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| Name |
(RefSeq) poly(A)-specific ribonuclease
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| KO |
| K12571 | PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] |
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| Organism |
tasp Trichoderma asperellum
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:tasp00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
36613290 (PAN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:tasp03019]
36613290 (PAN2)
Enzymes [BR:tasp01000]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
36613290 (PAN2)
Messenger RNA biogenesis [BR:tasp03019]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
36613290 (PAN2)
mRNA degradation factors
3'-5' decay
Pan complex
36613290 (PAN2)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
2:complement(join(1630568..1631429,1631491..1631704,1631773..1632175,1632231..1632335,1632388..1632527,1632595..1632845,1632896..1633315,1633375..1633961,1634017..1634143,1634201..1634376,1634436..1634543,1634672..1634692))
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| AA seq |
1137 aa
MDGDWDEVARIPFPPPGVHALPTQVTTMTFDTSQELLWAGNEYGRVTSFLGTELQRYSTF
KAHQAADGPVRQILTNDKGVVTLGAKDVHMASRRGPTMWHIRHDDMKDLKCMSFTSKGTA
EIIAAGLQNSMFVIDLIKGEVVKQVRTDHQYLIMKRGRYICAATRDGSVHLLDPITFAIV
KTWNAHSALINDMDAQHDFIVTCGYSLRQGQNYMLDPFLNVFDIKKMTSMPPIPFPAGAA
YVRMHPRMLTTSIVVSQSGQMHVVDLMNPNTSNVRQANVLSYLSMFEIAPSGEAMALTDA
ECYIHLWGSPSKLHFVDLPTPMEFATTEDAIQPIEWTPETPFNSIGLPYYRETLASAWPE
LISDVGAPPVKFDPQFLASLKSADFGLYGRNTRGLRRNQFEDTRSSNKSANSGLKAPKFL
SEKARDFAKSDSLTSAEKADELSNPFAELEIESRKSEFPMMYRNVEIKYSKFGVDDFDFG
FYNTTRYSGLEIHISNSYANSLLQIMHFTSLIRNLALQHAATACVSEVCLLCELGFLFDM
LQKAEGSICQATNMLKTLSSHPQAAPLGLLEEDTHGSSLNVMLQGLTRFLLERIAGDYKS
MAPASPLMDQVLATKATSSIRCMNCRSEYTRPGSTYVNDLLYPPLKAPGRNNKIPRTTFS
QILKSSVERETTSKGWCGRCQRYQTIATRKTIHSVPDVLMLNTAITSSDHRMLWSTPGWL
PEEIGIIVEQGQFFCYEGEDLKLHLQRGIHNITVYSLIGMAINIESGQTQKPHLVAMVNV
AHAEPNAPGQSQWHLFNDFLVRSVSSEEALSFNNSWKVPSVVTFQVKNANNKIDNSWKNN
IDTSLLYQDFNPSSRTENKTYKLLDPVTERPGPSTIIALDTEFVAVRQPEIEMNSDGERE
TIRPIVYALARASVVRGQGEFEGVPFIDDYISIREPIVDYLTSYSGITEDDLNPHTTKHS
LLPLKVAYKKLWILLNLGCKFLGHGLKQDFRVINIHVPKAQIIDTIDLFFLKSRLRKLSL
AFLAWYLLKEDIQMETHDSIEDSRTALQLYRKYLEFKDAGILDAMLQDIYRAGRDVNFKP
PRRDGVLDVPRSETPPPLPVENGTTPTPTPGPPSTPARGRGFGSGVSWTPGKGSPMR |
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| NT seq |
3414 nt +upstreamnt +downstreamnt
atggacggagactgggatgaggtcgctcgcattccatttccgcctccgggcgttcatgcg
ctgccgacacaagtaacgacaatgacctttgacacctcccaagagcttctttgggctggt
aacgaatatggtcgagtcacttcctttctgggcaccgagcttcaacgatactccaccttc
aaggcgcatcaagccgcagacgggccagttcggcagattttaacaaacgataaaggtgtt
gtgacattgggtgccaaagatgtgcatatggcatctaggagagggcccaccatgtggcat
atcaggcacgatgacatgaaagacttgaagtgcatgagtttcacttcaaagggaacggca
gagatcatagccgccggtctacaaaacagcatgtttgttattgacctcattaagggggaa
gtcgtcaaacaggttcgaacggaccatcaatacttgattatgaaacgcgggcgctatata
tgcgcagctacgagagacggatcagtacaccttttggatcccatcaccttcgccatcgtc
aaaacctggaatgctcactcagccttaatcaatgacatggatgctcaacacgatttcatc
gttacatgcggctactcgcttcgccaggggcagaattacatgttggatccctttctcaac
gttttcgatatcaagaagatgacatcgatgccgccgatcccgttccctgccggcgcggca
tatgtacgcatgcacccgcgcatgctcacgaccagcattgtggtgtctcaaagcggccag
atgcatgtggtggacctcatgaaccctaacaccagtaatgtacgacaggccaatgtgctg
agttacctcagcatgtttgagattgccccctccggcgaggctatggctctcaccgatgca
gaatgctatatccatctatggggatcgccatccaaactccatttcgttgacttacctact
cccatggaattcgccacaaccgaagacgcgattcaacctatagaatggactcccgaaacc
ccttttaattctatcggcctgccatactacagagaaacacttgcctctgcgtggcctgaa
ctgatctcagatgttggagcccccccagtcaaatttgatccgcagttccttgcgagcctt
aaatctgccgactttgggctctacggtcgaaatacacgaggccttcgcaggaaccaattt
gaagatactcggagctcgaacaaatccgctaattctggccttaaagctccaaagtttctt
agcgaaaaggctcgagattttgctaaatcggactcgttgacttctgcagaaaaggcagat
gaactctcgaatccatttgcagagttggaaatcgagagcagaaaatcagaatttccgatg
atgtatagaaacgtcgagatcaaatacagtaaatttggtgtcgatgatttcgattttggc
ttttataataccacacgatactctggcctcgagattcatatatcgaactcgtacgccaac
tcgctccttcaaatcatgcacttcacatctttaattcgaaacttggctttacaacatgca
gctacagcctgtgtgagcgaggtctgcctcctttgcgagctgggatttcttttcgatatg
cttcagaaagcagaaggatcaatctgccaggctactaatatgctcaagactctcagcagc
caccctcaagctgcgcctttgggattgctggaagaggatacacatggatcatccctaaac
gtaatgctacaggggctaacccgattcctactggagagaattgctggcgactataaatct
atggctccagcttcgccattgatggatcaggtgttggcgaccaaagcaactagctctatt
agatgtatgaattgcagaagcgagtatacccgacctgggtcgacatatgtaaacgatttg
ctttatccacctcttaaagccccaggtcgaaacaacaagattcctcgcaccactttctcc
caaattcttaagagcagcgtggagagagagacaacttcgaagggatggtgcggaagatgc
caacggtatcaaaccattgcaactagaaaaaccatccacagcgtcccagatgtcctgatg
ctcaataccgcaattaccagttcggatcatcgaatgctttggtccacgcctggctggtta
ccagaagaaatcggcatcatcgtcgaacagggccagttcttctgctacgagggggaagat
ttgaagcttcacttacaacgtggcattcataatatcacagtttattccttgattggaatg
gctatcaacattgagagtggccagacacaaaaaccgcatctcgtagccatggttaatgtt
gctcatgctgaaccaaacgcccccggtcagagccagtggcacctattcaacgattttcta
gttcgctccgtgagctcagaagaagctctttcatttaataattcttggaaagttccctct
gttgtcacattccaggttaagaatgcaaacaacaagatcgataatagttggaagaacaac
attgatacatcacttctatatcaagatttcaatcccagctcacgtaccgagaataagaca
tataagcttctggacccagtaacagagcgacctgggccatcaacgatcattgcactggac
actgaatttgttgcggtgcgacagccagagattgaaatgaactcggatggcgaacgagaa
accatccggccaatagtttatgcactggctcgcgcctccgttgtgcgaggccagggcgaa
ttcgaaggagtgcccttcatcgacgactatatttcaatcagagaacccatcgtcgactat
ttaacgtcatattcgggcatcaccgaagatgatttgaacccacacaccacaaaacatagc
ctgctgcctctaaaggtggcatataagaagctttggatactactcaacctcggttgcaag
tttttgggccacggactgaagcaagacttccgcgtcatcaacatccatgtccccaaagcg
caaatcatcgatactatcgacctattcttcctaaagtcacgcctgcgaaagctgtcgctc
gccttcttggcatggtacctgctcaaggaagacatccaaatggagacgcacgactccatc
gaagactccaggacggctctccagctgtacaggaaataccttgagttcaaagacgctggg
atcctggatgcgatgctgcaggatatttaccgcgccgggagggacgtgaactttaagccc
ccaagaagagatggcgttttggacgtccctagatcagagacgccgcctcctttgcctgtg
gagaatgggaccacgccgacgcctactcctgggccgccaagtacgcctgcgaggggaaga
gggtttggaagcggagttagttggacaccgggtaaaggatctcctatgaggtga |
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