KEGG   Trichoderma asperellum: 36613659
Entry
36613659          CDS       T10296                                 
Symbol
TrAFT101_008792
Name
(RefSeq) uncharacterized protein
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
tasp  Trichoderma asperellum
Pathway
tasp03008  Ribosome biogenesis in eukaryotes
tasp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tasp00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    36613659 (TrAFT101_008792)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    36613659 (TrAFT101_008792)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tasp03019]
    36613659 (TrAFT101_008792)
   03009 Ribosome biogenesis [BR:tasp03009]
    36613659 (TrAFT101_008792)
   03016 Transfer RNA biogenesis [BR:tasp03016]
    36613659 (TrAFT101_008792)
   03036 Chromosome and associated proteins [BR:tasp03036]
    36613659 (TrAFT101_008792)
Messenger RNA biogenesis [BR:tasp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     36613659 (TrAFT101_008792)
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     36613659 (TrAFT101_008792)
Ribosome biogenesis [BR:tasp03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    36613659 (TrAFT101_008792)
Transfer RNA biogenesis [BR:tasp03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    36613659 (TrAFT101_008792)
Chromosome and associated proteins [BR:tasp03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    36613659 (TrAFT101_008792)
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 R3H
Other DBs
NCBI-GeneID: 36613659
NCBI-ProteinID: XP_024761782
LinkDB
Position
5:join(1910886..1910890,1910950..1911043,1911108..1911417,1911480..1912784,1912852..1915409)
AA seq 1423 aa
MGVPKFFRWLSERYPAISQVIAENRIPEFDCLYLDMNGIIHNCTHKDAGEDTTFRLSEEE
MFIRIFNYIEHLFGKIKPKKLFFMAIDGVAPRAKMNQQRARRFRTALDAEKARDKAIRDG
IELPKEEPFDSNCITPGTEFMAKLSQQLRYFVNKKISEDTDWQGCDVVLSGHEVPGEGEH
KIMEYIRNAKAQPNYDPNVRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRASKTKSK
ELEHQNFYLLHLCIVREYLEMEFQELQNKDVLKFPFDLERVIDDFILMAFFVGNDFLPNL
PGLHINEGALANMFRIYKSVLPQCEGYINENGVIHLDRLQRLLDELSKTELDHFEYEVSD
QQWFASKQMEKKLEQKNGAKPRSQKNNQLIMTSFQRDLWKQKIRPFISNRSQQPLDLGSD
LKAADRKFVQDLSESMHLEWSTKEDEEGNRRLIVAFPPKKEGSDGEDEDEEEGNLAAYRV
MKSYDKATIADVSPEDAQKQYEELYQQKYQGWKTKYYLQKFEEWPQDKFEEEQKQLCENY
VQGLQWVLYYYYKGIASWPWFYAYHYAPLTSDVTKGLGADLNFKLGQPFKPNEQLMGVLP
DRSKKIVPTVYHDLMTNSKSPIIDFYPRDFELDMNGKKMEWEAVVKIPFIDEARLLAAMA
PQNELLSDDEKARNGFGVPLKFTYSPEVNFTYPSPLPGIFPEIQYCHCIENIFDLPNIEG
LEYVSGLTNGALVNIKALAGFPTLHTLPHSAQLVEGYGVNVFQQDSRNPSVIVTLTDTEM
RTKVETWKKKLGQRCFVGYPFIQEAKIIKVQDELFTYELAEDEETVVTKDHGNREASDFA
KEAEFLENWHAKRLGITVGQIECLVHVHMLKGLIKTEEGALIKEYAENPSLRKVYASQTI
VEEVVNEDERFIERSAMPIEEEFPQGTRAFFLGEFAYGRPLEVTGHVNGKANIVVLVPKN
KEPEITKKIIYQAERSNPYTPSFAIAKQLGVHPLILSKITSSFQVISAAGLKLNLGLNLK
FEGRKLKVLGYSRKSETGWEFSNLAVKLIADYMVAFPDFFAAIQKEPQRSETSERDLWSD
PSVASQRVKDIVAWLKKQETSKFERVPLDAEQLDSGIVMALATAGEQLHQASLEATAKPL
SSVPRTALLKPADAEMVLGNQTFKLGDRVTFVAAAGKVPIGTRGTVAGISRTATAVLLDV
VWDTSFMSGTTLGERAPMFRGQTVSSSTVLNTSNWQVVSASSKSRQRKSVPATGSVGSYG
SVGVTQYKDAPAPPPLRGGWRGAASGDSASSGRGRNSPGRGARGGKPNLLHSTLVYRPGQ
QGGNQSGDNANNAPNGNHAPNGNVNGRGGSGRGQGRGRGNGGSRGSLAPQTGPGRGQPGL
YGNVPPPANLETSRGGRGRGRGGRGRGGPNPNRGRGGAAAQQA
NT seq 4272 nt   +upstreamnt  +downstreamnt
atgggtgttcccaagttcttccgatggctctcagagcgttatccagctatctcgcaagta
attgcggaaaatcggattccagaattcgactgcctctatcttgacatgaatggtatcatc
cataactgcacacacaaagatgctggcgaggatactactttccgactcagcgaagaagaa
atgtttattcgtatattcaactacatcgagcacttgtttggaaagataaagcctaagaag
cttttcttcatggcaattgacggagttgctcctcgtgccaagatgaatcaacagcgtgct
agacgtttccgaacggctttggatgccgagaaagcacgcgacaaggcgatacgtgatggg
atagagctcccaaaagaggagccttttgacagcaattgcatcacaccaggtactgaattc
atggcgaaactatcacaacaactccgatattttgtaaacaaaaaaatctcggaagatacc
gattggcagggatgtgacgtcgtcctatctgggcacgaggttccaggtgaaggagagcat
aagattatggagtacatccggaacgcaaaggcacagccaaactacgacccgaacgtacgg
cactgcctttacggtcttgatgccgacttaatcatgcttggacttcttagccacgaccct
catttctgcctgctgcgtgaagaagttacgtttggacgagcctccaagacgaagtcaaag
gaacttgaacatcaaaacttctatctgctccatctctgtattgtgagggaatacctggaa
atggaatttcaggagcttcagaataaagacgttttaaagtttccgttcgatctcgaaaga
gtcattgacgacttcatcttgatggcatttttcgtcggaaacgactttttgccaaacctg
cccggattgcatatcaacgaaggcgctctggcgaacatgttcagaatatacaagtctgtc
cttccacagtgtgaaggctacatcaacgagaacggcgttattcatctggaccgtttacaa
cgtctgctcgacgagctcagcaagacagagttggatcacttcgaatacgaagtgtctgac
caacagtggtttgcgtcaaagcaaatggagaagaaactcgaacagaaaaatggagccaaa
ccgagatcgcaaaagaacaatcagctaatcatgacttcgtttcagagagatttgtggaaa
caaaagattcgtcctttcatctcaaacaggtcccagcagccactggacttgggatcagat
ctcaaggctgcggatcgaaaatttgttcaagatctctctgagtccatgcacttagaatgg
tctaccaaggaagacgaagagggcaatcgtcgccttatagtcgcgttcccccctaagaag
gaaggtagcgacggcgaggacgaggacgaagaggaaggaaacctcgcagcctatcgtgtc
atgaagtcctatgacaaagcgaccattgccgacgtttcccccgaagatgcccagaagcaa
tacgaagaattatatcagcaaaaatatcaaggctggaaaactaaatattatctgcaaaag
tttgaagaatggcctcaagacaaatttgaagaagaacaaaagcaactctgcgagaattat
gtgcaaggcctacaatgggtgctctattactactacaaaggcattgcctcgtggccatgg
ttttatgcctatcactatgcaccgctcacgtcggatgttaccaagggcctcggtgccgac
ctgaacttcaagctgggtcagccctttaagcctaacgaacaactcatgggtgtgttgccg
gaccgaagcaaaaaaattgtgccaacagtttaccacgacctaatgaccaattcaaaatct
ccaattattgacttctatccacgagatttcgaattggatatgaacggcaaaaagatggag
tgggaagcagtggtcaaaatcccattcattgacgaagcgcgtcttctcgctgccatggcg
ccccaaaatgagcttcttagcgacgacgaaaaggcacgaaacggctttggagttcccctt
aaattcacatactctcccgaagtcaacttcacttatccttctccacttcctgggatcttc
ccggagatacagtattgtcattgcattgagaatatctttgatctgccaaacattgagggg
ctcgaatacgtctcgggactgacgaacggagctttggtgaatatcaaggctcttgctgga
ttcccaactctacatacactgccacattcggcacagctagtagaaggatatggagtcaat
gttttccagcaagacagcagaaacccaagtgtcatcgtgacccttaccgatacggagatg
cggacaaaggttgaaacttggaagaagaagctaggtcagcgctgcttcgttggctatcca
ttcatccaagaagccaaaattatcaaggtgcaggatgagctatttacctacgagctggct
gaagatgaagaaactgttgttacaaaagatcatggcaacagagaagcttccgattttgca
aaggaggcagaattcttagagaattggcatgccaaacgcctgggaatcacggtcggccag
attgaatgccttgttcacgttcatatgctcaagggtctcatcaaaacggaagagggtgct
ctaatcaaggagtacgctgaaaaccccagcttgcgcaaggtatatgcgtctcaaaccatt
gtggaagaagtagtcaatgaagacgaacgtttcatcgagagatcagccatgccgattgaa
gaagaattccctcaaggcacacgagctttctttttgggtgaatttgcttacggtcgcccc
ctggaggtgactggacatgtgaatggcaaggcaaatattgtggtcttggttcccaaaaac
aaggagccggaaatcacgaagaagatcatctaccaagcagaacgctctaacccatatacg
ccctctttcgcgatcgccaaacagctaggcgtccatcctctcatcctcagcaagataacg
tcgtctttccaagttattagtgctgctgggctgaagctgaatctgggcctcaatttgaaa
tttgagggtcgaaagctcaaggtgttggggtactcacgcaagtcggagacggggtgggaa
ttctccaacttggctgtgaagcttattgctgattacatggtcgcattccccgacttcttc
gcggcaattcagaaagaaccgcaaagaagcgagacttccgagagagacctgtggagcgac
ccaagcgttgcttcgcagcgggtcaaagacatagtagcgtggctaaagaaacaagagacg
agcaaatttgaacgagtccccctcgacgctgagcagctcgattcgggaattgtcatggct
ctggctacggctggagaacaattgcaccaagcgagcttggaggcgactgccaagcccctc
agctctgtgcctcgtacagccttgttgaagccggcggatgcggagatggtgctaggcaac
caaactttcaagctaggagatcgagttactttcgttgccgctgccggtaaagtcccaatt
ggaactcggggaactgttgccggtatttctcgcacagcaactgctgttctcctggacgtc
gtgtgggacacctcctttatgagtggcacgactctgggtgagagagctccaatgttccgt
gggcagaccgtttcatcgtcgacagtgctgaatacttcaaactggcaggtcgtctctgca
tcatcaaaatcgcgacaaagaaaatctgttccggccacgggatcggttggatcgtacggt
tcagtcggtgttacgcagtataaggacgcaccagctcctccccctctccgaggcggatgg
cgcggagctgcttcaggcgattcagcttcatcgggccgtgggcggaatagccctggtcgc
ggcgcccgaggaggtaaaccaaatctactgcacagcacacttgtttaccggccgggccaa
caagggggtaaccaaagcggcgacaatgcgaacaatgcccccaatggaaaccacgccccg
aatggaaacgtaaatggaagaggaggaagtggcagaggccaagggcgtggccgaggcaat
ggcggcagcagaggctcgcttgctccccaaactggacctggacggggccaaccaggcctc
tatggcaacgtgccgcctcctgctaaccttgagacgtcgcgaggcgggcgtggtcgtggt
cgaggaggaaggggacgtggtgggcccaatcccaatcgtggccgtgggggtgctgccgcc
cagcaagcatag

DBGET integrated database retrieval system