Trichoderma asperellum: 36614636
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Entry
36614636 CDS
T10296
Symbol
SUB2, TrAFT101_000778
Name
(RefSeq) Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tasp Trichoderma asperellum
Pathway
tasp03013
Nucleocytoplasmic transport
tasp03015
mRNA surveillance pathway
tasp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tasp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
36614636 (SUB2)
09122 Translation
03013 Nucleocytoplasmic transport
36614636 (SUB2)
03015 mRNA surveillance pathway
36614636 (SUB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tasp03019
]
36614636 (SUB2)
03041 Spliceosome [BR:
tasp03041
]
36614636 (SUB2)
Enzymes [BR:
tasp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
36614636 (SUB2)
Messenger RNA biogenesis [BR:
tasp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
36614636 (SUB2)
Spliceosome [BR:
tasp03041
]
Complex C
Other components
EJC/TREX
36614636 (SUB2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
36614636 (SUB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
DUF6066
Motif
Other DBs
NCBI-GeneID:
36614636
NCBI-ProteinID:
XP_024765000
LinkDB
All DBs
Position
1:join(2490627..2490858,2491555..2491965,2492023..2492383,2492457..2492714,2492796..2492844)
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AA seq
436 aa
AA seq
DB search
MSHEEDLIDYSDEEIGAANETAAAAASNGKKGEAAASGAVDKKGSYVGIHSTGFRDFLLK
PELLRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGE
VSVVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKNDVETLKGKDTCPHIIVG
TPGRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPQQKQVMMFSATL
AENIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEREKNRKLNELLDDLQFNQVI
IFVKSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVFGRGI
DIERINLAINYDLPGDASSYLHRVGRAGRFGTKGLAISFVSTEGDQEVLKEIEKRFEVAL
PEFPKEGVDASTYMAS
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaggatctcattgactactccgatgaggagattggcgccgccaacgag
accgccgccgctgccgcttctaacggaaagaagggagaggcagctgctagcggcgctgtc
gacaagaagggcagctacgtcggcattcactccactggattccgcgatttcttgctgaag
cccgagcttctgcgtgctatcggagattgcggtttcgaacatccttcggaggtccaacaa
acatgtatcccccaagctcttcttggtggagacatcatctgccaggccaagtctggtctg
ggaaagactgccgtctttgtcctcgccacgcttcagcaagtcgagcccgttaatggcgag
gtctcggttgttgtcatgtgccacactcgtgagctggcctaccagatccgagacgagtac
aaccgattcagcaagtacatgcctgacatcaagaccggtgtcttctacggcggtactccc
atcaagaacgacgtcgagactctcaagggcaaggacacttgccctcacatcattgtcggt
acccccggtcgtctcaaggctctggtccgcgacaaggctctccgtctcggaagcgtccgc
atcttcgttcttgacgagtgtgacaagatgctcgaccaacccgatatgcgtaccgacgtg
caggatgtgttccgcgctaccccccagcagaagcaggtcatgatgttttccgccacgctt
gccgagaacatcaagcccatctgccgcaagttcatgcagaatcccacagagcactatgtc
gacgaagacaccaagctcactctccacggtctccagcagtactacatcaagctagaggaa
cgcgagaagaaccgaaagctgaatgagcttcttgacgaccttcagttcaaccaggtcatc
atctttgtcaagagcactgtccgcgcgaccgagctggacaagctcctccgcgagtgtaac
ttcccttctatcgctgtccactctggagtcagccaggaggagcgtatccgccgctacaag
gagttcaaggagttcaagaagcgtatctgcgttgccactgacgtcttcggacgtggcatc
gacattgagcgaatcaacctggcgatcaactacgacttgcctggcgatgccagctcctac
ctccaccgtgtcggacgtgctggtcgattcggtaccaagggtcttgctatttcctttgtg
agcaccgagggagatcaggaggtcctcaaggagattgagaagcgattcgaagtcgctctt
cccgaattccccaaggagggtgtcgatgccagcacctacatggcgtcttag
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